Clostridioides difficile Cd1 |
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Putative Clostridioides difficile Cd1 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,259,604 bp
GenBank #: CP037844
REBASE acronym: CdiCd1
Org_num: 50440
All begin E1H24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16930 | DUF262 domain-containing protein | |||
| 16935 | R | Cdo072ORF15725P (100% identity) | TAAANNNNGRTG | CdiCd1ORF16960P |
| 16940 | 142 aa hypothetical protein | |||
| 16945 | nucleotidyltransferase domain-containing | |||
| 16950 | 102 aa hypothetical protein | |||
| 16955 | S | S.Cdi109II (100% identity) | TAAANNNNGRTG | S.CdiCd1ORF16960P |
| 16960 | M | M.CdiEW3I (100% identity) | TAAANNNNGRTG | M.CdiCd1ORF16960P |
| 16965 | ketose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2305 | N-acetylmuramoyl-L-alanine amidase | |||
| 2310 | M | M.CdiEW3ORFBP (100% identity) | M.CdiCd1ORF2310P | |
| 2315 | iron-containing alcohol dehydrogenase | |||
| 9235 | SrtB-anchored collagen-binding adhesin | |||
| 9240 | M | M.Cdi109ORFBP (99% identity) | M.CdiCd1ORF9240P | |
| 9245 | DUF961 domain-containing protein | |||
| 12035 | XRE family transcriptional regulator | |||
| 12040 | M | M.Cdi109III (100% identity) | GAATTC | M.CdiCd1ORF12040P |
| ??? | R | Cdi109IIIP (89% identity) | GAATTC | CdiCd1ORF12040P |
| 12050 | excisionase | |||
| 15615 | patatin-like phospholipase family protein | |||
| 15620 | M | M.Cdi109I (100% identity) | CAAAAA | M.CdiCd1ORF15620P |
| 15625 | Rrf2 family transcriptional regulator | |||
| 17515 | 305 aa hypothetical protein | |||
| 17520 | M | M.Cdi109ORFDP (97% identity) | M.CdiCd1ORF17520P | |
| 17525 | R | Cdi963ORF4930P (100% identity) | CdiCd1ORF17520P | |
| 17530 | 91 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11735 | AAA family ATPase | |||
| 11740 | R | Cdi109McrCP (100% identity) | CdiCd1McrCP | |
| 11745 | R | CdiM161McrBP (99% identity) | CdiCd1McrBP | |
| 11750 | cell division protein | |||