Clostridioides difficile Cd3 |
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Putative Clostridioides difficile Cd3 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,262,103 bp | CP037849 |
| plasmid pCd3_3: | 78,329 bp | CP037851 |
REBASE acronym: CdiCd3
Org_num: 50456
All begin E1H26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15315 | DUF262 domain-containing protein | |||
| 15320 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | CdiCd3ORF15345P |
| 15325 | 142 aa hypothetical protein | |||
| 15330 | nucleotidyltransferase domain-containing | |||
| 15335 | 102 aa hypothetical protein | |||
| 15340 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.CdiCd3ORF15345P |
| 15345 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.CdiCd3ORF15345P |
| 15350 | ketose-bisphosphate aldolase | |||
| 15870 | 111 aa hypothetical protein | |||
| 15875 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiCd3ORF15890P |
| 15880 | 423 aa hypothetical protein | |||
| 15885 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiCd3ORF15890P |
| 15890 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.CdiCd3ORF15890P |
| 15895 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6465 | 39 aa hypothetical protein | |||
| 6470 | M | M.CdiS0352ORF4245P (100% identity) | M.CdiCd3ORF6470P | |
| 6475 | 39 aa hypothetical protein | |||
| 8395 | 82 aa hypothetical protein | |||
| 8400 | M | M.Pdi30ORF7740P (100% identity) | M.CdiCd3ORF8400P | |
| 8405 | 73 aa hypothetical protein | |||
| 9665 | 69 aa hypothetical protein | |||
| 9670 | M | M.Pdi30ORF7740P (100% identity) | M.CdiCd3ORF9670P | |
| 9675 | 38 aa hypothetical protein | |||
| 14025 | patatin-like phospholipase family protein | |||
| 14030 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd3ORF14030P |
| 14035 | Rrf2 family transcriptional regulator | |||
| 15710 | class B sortase | |||
| 15715 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiCd3ORF15715P |
| 15720 | 872 aa hypothetical protein | |||
| 15795 | 383 aa hypothetical protein | |||
| 15800 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiCd3ORF15800P |
| 15805 | M | M2.Pdi30ORF18765P (100% identity) | CATCG | M2.CdiCd3ORF15800P |
| 15810 | recombinase family protein | |||
| plasmid pCd3_3 | ||||
| 21845 | 191 aa hypothetical protein | |||
| 21850 | M | M.CdiMA2ORF4290P (74% identity) | M.CdiCd3ORF21850P | |
| 21855 | 98 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10240 | AAA family ATPase | |||
| 10245 | R | Pdi30McrCP (100% identity) | CdiCd3McrCP | |
| 10250 | R | Pdi30McrBP (100% identity) | CdiCd3McrBP | |
| 10255 | cell division protein | |||