Clostridioides difficile Cd4 |
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Putative Clostridioides difficile Cd4 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,184,598 bp
GenBank #: CP037848
REBASE acronym: CdiCd4
Org_num: 50457
All begin E1H27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4575 | 115 aa hypothetical protein | |||
| 4580 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.CdiCd4ORF4580P |
| 4585 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiCd4ORF4580P |
| 4590 | 423 aa hypothetical protein | |||
| 4595 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiCd4ORF4580P |
| 4600 | 111 aa hypothetical protein | |||
| 5120 | ketose-bisphosphate aldolase | |||
| 5125 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.CdiCd4ORF5125P |
| 5130 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.CdiCd4ORF5125P |
| 5135 | 102 aa hypothetical protein | |||
| 5140 | nucleotidyltransferase domain-containing | |||
| 5145 | 142 aa hypothetical protein | |||
| 5150 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | CdiCd4ORF5125P |
| 5155 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 170 | 73 aa hypothetical protein | |||
| 175 | M | M.Pdi30ORF7740P (100% identity) | M.CdiCd4ORF175P | |
| 180 | 38 aa hypothetical protein | |||
| 4660 | recombinase family protein | |||
| 4665 | M | M2.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiCd4ORF4665P |
| 4670 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M2.CdiCd4ORF4665P |
| 4675 | 383 aa hypothetical protein | |||
| 4750 | 872 aa hypothetical protein | |||
| 4755 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiCd4ORF4755P |
| 4760 | class B sortase | |||
| 6435 | Rrf2 family transcriptional regulator | |||
| 6440 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd4ORF6440P |
| 6445 | patatin-like phospholipase family protein | |||
| 15720 | 69 aa hypothetical protein | |||
| 15725 | M | M.CdiS122ORF7470P (100% identity) | M.CdiCd4ORF15725P | |
| 15730 | 38 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10165 | cell division protein | |||
| 10170 | R | Pdi30McrBP (100% identity) | CdiCd4McrBP | |
| 10175 | R | Pdi30McrCP (100% identity) | CdiCd4McrCP | |
| 10180 | AAA family ATPase | |||