Clostridioides difficile Cd15 |
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Putative Clostridioides difficile Cd15 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
| Sequence length: | GenBank #: | |
| Chromosome: | 4,200,508 bp | CP037813 |
| plasmid pCd15_2: | 129,127 bp | CP037814 |
| plasmid pCd15_3: | 45,179 bp | CP037815 |
REBASE acronym: CdiCd15
Org_num: 50446
All begin E1H38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15770 | DUF262 domain-containing protein | |||
| 15775 | R | CdiCd8ORF15865P (100% identity) | CANNNNNNNTAAAG | CdiCd15ORF15800P |
| 15780 | 142 aa hypothetical protein | |||
| 15785 | nucleotidyltransferase domain-containing | |||
| 15790 | 102 aa hypothetical protein | |||
| 15795 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiCd15ORF15800P |
| 15800 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiCd15ORF15800P |
| 15805 | ketose-bisphosphate aldolase | |||
| 17840 | 424 aa hypothetical protein | |||
| 17845 | R | CdiTTIIIP (100% identity) | ATCNNNNNNCTC | CdiCd15ORF17855P |
| 17850 | S | S.CdiTTIII (100% identity) | ATCNNNNNNCTC | S.CdiCd15ORF17855P |
| 17855 | M | M.CdiTTIII (100% identity) | ATCNNNNNNCTC | M.CdiCd15ORF17855P |
| 17860 | C | C.SanVSI16ORF6495P (100% identity) | C.CdiCd15ORF17855P | |
| 17865 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14485 | patatin-like phospholipase family protein | |||
| 14490 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd15ORF14490P |
| 14495 | Rrf2 family transcriptional regulator | |||
| 16245 | LytTR family transcriptional regulator | |||
| 16250 | M | M.Pdi9689DndCP (100% identity) | M.CdiCd15DndCP | |
| 16255 | DNA sulfur modification protein DndD | |||
| 16250 | DNA phosphorothioation system sulfurtransferase | |||
| 16255 | M | M.Pdi9689DndDP (100% identity) | M.CdiCd15DndDP | |
| 16260 | DUF1832 domain-containing protein | |||
| 16255 | DNA sulfur modification protein DndD | |||
| 16260 | M | M.Pdi9689DndEP (100% identity) | M.CdiCd15DndEP | |
| 16265 | 1078 aa hypothetical protein | |||
| plasmid pCd15_2 | ||||
| 19880 | 145 aa hypothetical protein | |||
| 19885 | RM | Cdi40101ORF40300P (90% identity) | CdiCd15ORF19885P | |
| 19890 | 107 aa hypothetical protein | |||
| plasmid pCd15_3 | ||||
| 20605 | CopY family transcriptional regulator | |||
| 20610 | M | M.Pdi9689ORF3833P (100% identity) | M.CdiCd15ORF20610P | |
| 20615 | N-acetylmuramoyl-L-alanine amidase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10980 | AAA family ATPase | |||
| 10985 | R | Pdi6602McrCP (100% identity) | CdiCd15McrCP | |
| 10990 | R | CdiM161McrBP (100% identity) | CdiCd15McrBP | |
| 10995 | cell division protein | |||