Clostridioides difficile Cd16 |
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Putative Clostridioides difficile Cd16 RM systems
Ref: Zhao,C. unpublished
REBASE ref # 31777
Complete sequence: 4,203,966 bp
GenBank #: CP037812
REBASE acronym: CdiCd16
Org_num: 50447
All begin E1H39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16515 | DUF262 domain-containing protein | |||
| 16520 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | CdiCd16ORF16545P |
| 16525 | 142 aa hypothetical protein | |||
| 16530 | nucleotidyltransferase domain-containing | |||
| 16535 | 102 aa hypothetical protein | |||
| 16540 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.CdiCd16ORF16545P |
| 16545 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.CdiCd16ORF16545P |
| 16550 | ketose-bisphosphate aldolase | |||
| 17070 | 111 aa hypothetical protein | |||
| 17075 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | CdiCd16ORF17090P |
| 17080 | 423 aa hypothetical protein | |||
| 17085 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.CdiCd16ORF17090P |
| 17090 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.CdiCd16ORF17090P |
| 17095 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5515 | 38 aa hypothetical protein | |||
| 5520 | M | M.CdiS122ORF7470P (100% identity) | M.CdiCd16ORF5520P | |
| 5525 | 69 aa hypothetical protein | |||
| 8460 | 39 aa hypothetical protein | |||
| 8465 | M | M.CdiS0352ORF4245P (100% identity) | M.CdiCd16ORF8465P | |
| 8470 | 39 aa hypothetical protein | |||
| 15225 | patatin-like phospholipase family protein | |||
| 15230 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiCd16ORF15230P |
| 15235 | Rrf2 family transcriptional regulator | |||
| 16910 | class B sortase | |||
| 16915 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.CdiCd16ORF16915P |
| 16920 | 872 aa hypothetical protein | |||
| 16995 | 383 aa hypothetical protein | |||
| 17000 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.CdiCd16ORF17000P |
| 17005 | M | M2.Pdi30ORF18765P (100% identity) | CATCG | M2.CdiCd16ORF17000P |
| 17010 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11500 | AAA family ATPase | |||
| 11505 | R | Pdi30McrCP (100% identity) | CdiCd16McrCP | |
| 11510 | R | Pdi30McrBP (100% identity) | CdiCd16McrBP | |
| 11515 | cell division protein | |||