Salmonella enterica subsp. enterica serovar Sandiego CFSAN012509 |
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Putative Salmonella enterica subsp. enterica serovar Sandiego CFSAN012509 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
Complete sequence: 4,839,265 bp
GenBank #: CP075039
REBASE acronym: Sen12509
Org_num: 51619
All begin QW74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5850 | IS1 family transposase | |||
| 5855 | R | EcoteDORF5645P (100% identity) | ACAYNNNNCTG | Sen12509ORF5865P |
| 5860 | S | S.EhoC4ORF16660P (100% identity) | ACAYNNNNCTG | S.Sen12509ORF5865P |
| 5865 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Sen12509ORF5865P |
| 5870 | integrase core domain-containing protein | |||
| 20560 | malate transporter | |||
| 20565 | R | SenR3019ORFDP (100% identity) | CCANNNNNGRTG | Sen12509ORF20570P |
| 20570 | M | M.SenR3019ORFDP (100% identity) | CCANNNNNGRTG | M.Sen12509ORF20570P |
| 20575 | S | S.Sen74111ORF19105P (100% identity) | CCANNNNNGRTG | S.Sen12509ORF20570P |
| 20580 | 5-nucleotidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | cell division protein DamX | |||
| 1760 | M | M.StyTDamP (100% identity) | GATC | M.Sen12509DamP |
| 1765 | ribulose-phosphate 3-epimerase | |||
| 2250 | DUF2556 family protein | |||
| 2255 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen12509ORF2255P |
| 2260 | DNA-binding transcriptional regulator Fis | |||
| 5945 | DUF3850 domain-containing protein | |||
| 5950 | M | M.SenC618ORF1130P (100% identity) | M.Sen12509ORF5950P | |
| 5955 | replication endonuclease | |||
| 9725 | phosphohydrolase | |||
| 9730 | M | M.Sen6803DcmP (100% identity) | CCWGG | M.Sen12509DcmP |
| 9735 | V | V.StyUK1DcmP (100% identity) | V.Sen12509DcmP | |
| 9740 | drug/metabolite exporter YedA | |||
| 13280 | 92 aa hypothetical protein | |||
| 13285 | M | M.SenK0366ORFCP (93% identity) | M.Sen12509ORF13285P | |
| 13290 | 81 aa hypothetical protein | |||
| 13390 | lysozyme | |||
| 13395 | M | M.Sen24590ORF23130P (92% identity) | M.Sen12509ORF13395P | |
| 13400 | lysis protein | |||
| 18220 | lysis protein | |||
| 18225 | M | M.SenU1590ORF11730P (98% identity) | M.Sen12509ORF18225P | |
| 18230 | lysozyme | |||
| 18360 | YqaJ viral recombinase family protein | |||
| 18365 | M | M.SenS334ORF18485P (96% identity) | M.Sen12509ORF18365P | |
| 18370 | DUF4060 family protein | |||
| 20580 | 5-nucleotidase | |||
| 20585 | R | SenRM074ORF19845P (100% identity) | GAAC | Sen12509ORF20585P |
| 20590 | integrase arm-type DNA-binding domain-containing | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17920 | 33 aa hypothetical protein | |||
| 17925 | R | Sen24590ORF16300P (100% identity) | CAGAG | Sen12509ORF17930P |
| 17930 | M | M.SenC046ORF17340P (100% identity) | CAGAG | M.Sen12509ORF17930P |
| 17935 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14070 | NADP-dependent isocitrate dehydrogenase | |||
| 14075 | R | SsoSE61ORF22640P (100% identity) | YCGR | Sen12509ORF14075P |
| 14080 | site-specific DNA recombinase | |||