Salmonella enterica subsp. enterica serovar Sandiego CFSAN012498 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Sandiego CFSAN012498 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
Complete sequence: 4,677,546 bp
GenBank #: CP075040
REBASE acronym: Sen12498
Org_num: 51618
All begin QV97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19280 | malate transporter | |||
| 19285 | R | SenR3019ORFDP (100% identity) | CCANNNNNGRTG | Sen12498ORF19290P |
| 19290 | M | M.SenR3019ORFDP (100% identity) | CCANNNNNGRTG | M.Sen12498ORF19290P |
| 19295 | S | S.Sen74111ORF19105P (100% identity) | CCANNNNNGRTG | S.Sen12498ORF19290P |
| 19300 | 5-nucleotidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1760 | cell division protein DamX | |||
| 1765 | M | M.StyTDamP (100% identity) | GATC | M.Sen12498DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2255 | DUF2556 family protein | |||
| 2260 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen12498ORF2260P |
| 2265 | DNA-binding transcriptional regulator Fis | |||
| 8510 | phosphohydrolase | |||
| 8515 | M | M.Sen6803DcmP (100% identity) | CCWGG | M.Sen12498DcmP |
| 8520 | V | V.StyUK1DcmP (100% identity) | V.Sen12498DcmP | |
| 8525 | drug/metabolite exporter YedA | |||
| 19300 | 5-nucleotidase | |||
| 19305 | R | SenRM074ORF19845P (100% identity) | GAAC | Sen12498ORF19305P |
| 19310 | integrase arm-type DNA-binding domain-containing | |||
| 21515 | replication endonuclease | |||
| 21520 | M | M.Sens24230ORF22495P (100% identity) | M.Sen12498ORF21520P | |
| 21525 | 127 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16830 | 33 aa hypothetical protein | |||
| 16835 | R | Sens30601ORF17060P (100% identity) | CAGAG | Sen12498ORF16840P |
| 16840 | M | M.SenC046ORF17340P (100% identity) | CAGAG | M.Sen12498ORF16840P |
| 16845 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12820 | NADP-dependent isocitrate dehydrogenase | |||
| 12825 | R | SsoSE61ORF22640P (100% identity) | YCGR | Sen12498ORF12825P |
| 12830 | site-specific DNA recombinase | |||