Salmonella enterica subsp. enterica serovar Newport CFSAN000827 |
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Putative Salmonella enterica subsp. enterica serovar Newport CFSAN000827 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
Complete sequence: 4,893,756 bp
GenBank #: CP074606
REBASE acronym: Sen827
Org_num: 51602
All begin DLM99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20230 | restriction endonuclease | |||
| 20235 | M | M2.SenS38AORF3430P (100% identity) | CCGANNNNNGTC | M.Sen827ORF20235P |
| 20240 | IS3 family transposase | |||
| 20245 | S | S.Sens29927ORF20165P (100% identity) | CCGANNNNNGTC | S.Sen827ORF20235P |
| 20250 | R | Sens29927ORF20165P (100% identity) | CCGANNNNNGTC | Sen827ORF20235P |
| 20255 | DUF91 domain-containing protein | |||
| 20470 | WYL domain-containing protein | |||
| 20475 | R | Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | Sen827ORF20480P |
| 20480 | M | M.SenS38AORF3180P (100% identity) | TTACNNNNNTGC | M.Sen827ORF20480P |
| 20485 | S | S.Sens29927ORF20405P (100% identity) | TTACNNNNNTGC | S.Sen827ORF20480P |
| 20490 | integrase arm-type DNA-binding domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1750 | cell division protein DamX | |||
| 1755 | M | M.StyTDamP (100% identity) | GATC | M.Sen827DamP |
| 1760 | ribulose-phosphate 3-epimerase | |||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen827ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 5360 | 146 aa hypothetical protein | |||
| 5365 | M | M.SenS38AORF18010P (100% identity) | M.Sen827ORF5365P | |
| 5370 | 104 aa hypothetical protein | |||
| 5415 | conserved phage C-terminal domain-containing | |||
| 5420 | M | M.SenS38AORF17955P (100% identity) | M.Sen827ORF5420P | |
| 5425 | RusA family crossover junction | |||
| 9205 | PerC family transcriptional regulator | |||
| ??? | M | M.SenS38AORF14125P (100% identity) | M.Sen827ORF9210P | |
| 9215 | RusA family crossover junction | |||
| 9445 | phosphohydrolase | |||
| 9450 | M | M.Sens29927DcmP (100% identity) | CCWGG | M.Sen827DcmP |
| 9455 | V | V.StyTDcmP (100% identity) | V.Sen827DcmP | |
| 9460 | drug/metabolite exporter YedA | |||
| 20365 | YebC/PmpR family DNA-binding transcriptional | |||
| 20370 | R | SenXORF20240P (100% identity) | Sen827ORF20370P | |
| 20375 | restriction endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17945 | 33 aa hypothetical protein | |||
| 17950 | R | Sens29927ORF17960P (100% identity) | CAGAG | Sen827ORF17955P |
| 17955 | M | M.Sens29927ORF17960P (100% identity) | CAGAG | M.Sen827ORF17955P |
| 17960 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20225 | N-6 DNA methylase | |||
| 20230 | R | Sens29927MrrP (100% identity) | Sen827MrrP | |
| 20235 | type I restriction-modification system subunit | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5655 | 3-5 exonuclease | |||
| 5660 | M | M.Sens24219ORF5575P (100% identity) | M.Sen827ORF5660P | |
| 5665 | replication endonuclease | |||