Salmonella enterica subsp. enterica serovar Typhi CFSAN001004 |
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Putative Salmonella enterica subsp. enterica serovar Typhi CFSAN001004 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
Complete sequence: 4,787,779 bp
GenBank #: CP074603
REBASE acronym: Sen1004
Org_num: 51623
All begin AIT58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19050 | restriction endonuclease | |||
| 19055 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen1004ORF19060P |
| 19060 | M | M.StyTORF4575P (88% identity) | GAANNNNNNNNTCGC | M.Sen1004ORF19060P |
| 19065 | 46 aa hypothetical protein | |||
| 19070 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen1004ORF19060P |
| 19075 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1730 | cell division protein DamX | |||
| 1735 | M | M.StyTDamP (100% identity) | GATC | M.Sen1004DamP |
| 1740 | ribulose-phosphate 3-epimerase | |||
| 2210 | DUF2556 family protein | |||
| 2215 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen1004ORF2215P |
| 2220 | DNA-binding transcriptional regulator Fis | |||
| 9025 | DUF4060 family protein | |||
| ??? | M | M.SenCEPR1ORF14095P (100% identity) | M.Sen1004ORF9030P | |
| 9035 | DGQHR domain-containing protein | |||
| 9090 | ead/Ea22-like family protein | |||
| 9095 | M | M.StyTORF1914P (100% identity) | M.Sen1004ORF9095P | |
| 9100 | DUF550 domain-containing protein | |||
| 14305 | drug/metabolite exporter YedA | |||
| 14310 | V | V.StyTDcmP (100% identity) | V.Sen1004DcmP | |
| 14315 | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen1004DcmP |
| 14320 | phosphohydrolase | |||
| 19190 | YebC/PmpR family DNA-binding transcriptional | |||
| 19195 | R | Senst12ORF9665P (100% identity) | Sen1004ORF19195P | |
| 19200 | 79 aa hypothetical protein | |||
| 20265 | 3-5 exonuclease | |||
| 20270 | M | M.StyTORF4329P (100% identity) | M.Sen1004ORF20270P | |
| 20275 | replication endonuclease | |||
| 21905 | TraR/DksA family transcriptional regulator | |||
| 21910 | M | M.StyTORF3409P (100% identity) | GATC | M.Sen1004ORF21910P |
| 21915 | replication endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6120 | MFS transporter | |||
| 6125 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen1004ORF6125P |
| 6130 | R | StyTORF2507P (99% identity) | CAGAG | Sen1004ORF6125P |
| 6135 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19045 | BrnT family toxin | |||
| 19050 | R | StyTMrrP (100% identity) | Sen1004MrrP | |
| 19055 | type I restriction-modification system | |||