Escherichia coli 588888 |
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Putative Escherichia coli 588888 RM systems
Ref: Greig,D.R. et al. unpublished
REBASE ref # 31809
| Sequence length: | GenBank #: | |
| Chromosome: | 5,522,628 bp | CP073613 |
| plasmid p588888_2: | 92,868 bp | CP073615 |
REBASE acronym: Eco588888
Org_num: 47721
All begin D4M24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3350 | endoribonuclease SymE | |||
| 3355 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco588888ORF3360P |
| 3360 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco588888ORF3360P |
| 3365 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco588888ORF3360P |
| 3370 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1855 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco588888ORF1860P | |
| 1865 | Eae protein | |||
| 3095 | transposase | |||
| 3100 | R | Ecos1613ORF26795P (100% identity) | Eco588888ORF3100P | |
| 3105 | N-acetylneuraminic acid mutarotase | |||
| 3135 | DEAD/DEAH box helicase | |||
| 3140 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco588888ORF3140P |
| 9440 | phosphohydrolase | |||
| 9445 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco588888DcmP |
| 9450 | V | V.EcosPA8DcmP (100% identity) | V.Eco588888DcmP | |
| 9455 | drug/metabolite exporter YedA | |||
| 14155 | DUF1737 domain-containing protein | |||
| 14170 | M | M.EcoSCU390ORF16715P (86% identity) | M.Eco588888ORF14170P | |
| 14175 | 85 aa hypothetical protein | |||
| 18035 | NinE family protein | |||
| 18040 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco588888ORF18040P |
| 18045 | recombination protein NinB | |||
| 25150 | DNA-binding transcriptional regulator Fis | |||
| 25155 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco588888ORF25155P |
| 25160 | DUF2556 family protein | |||
| 25670 | ribulose-phosphate 3-epimerase | |||
| 25675 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco588888DamP |
| 25680 | cell division protein DamX | |||
| plasmid p588888_2 | ||||
| 28265 | 101 aa hypothetical protein | |||
| 28270 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco588888ORF28270P | |
| 28275 | 73 aa hypothetical protein | |||