Escherichia coli O157:H7 TT12A |
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Putative Escherichia coli O157:H7 TT12A RM systems
Ref: Allue-Guardia,A. et al. unpublished
REBASE ref # 29328
| Sequence length: | GenBank #: | |
| Chromosome: | 5,501,009 bp | CP038496 |
| plasmid pO157: | 92,710 bp | CP038497 |
REBASE acronym: EcoTT12A
Org_num: 46698
All begin E5F08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3095 | endoribonuclease SymE | |||
| 3100 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoTT12AORF3105P |
| 3105 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoTT12AORF3105P |
| 3110 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoTT12AORF3105P |
| 3115 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2835 | transposase | |||
| 2840 | R | Ecos1613ORF26795P (100% identity) | EcoTT12AORF2840P | |
| 2845 | N-acetylneuraminate epimerase | |||
| 2875 | DEAD/DEAH box helicase | |||
| 2880 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoTT12AORF2880P |
| 9550 | recombination protein NinB | |||
| 9555 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoTT12AORF9555P |
| 9560 | NinE family protein | |||
| 12600 | TrmB family transcriptional regulator | |||
| 12605 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoTT12AORF12605P | |
| 12620 | 61 aa hypothetical protein | |||
| 14195 | DUF1367 family protein | |||
| 14200 | R | Ecos15739ORF2910P (100% identity) | EcoTT12AORF14210P | |
| 14205 | 329 aa hypothetical protein | |||
| 14210 | M | M.Ecos15739ORF2910P (100% identity) | M.EcoTT12AORF14210P | |
| 14215 | 81 aa hypothetical protein | |||
| 17385 | drug/metabolite exporter YedA | |||
| 17390 | V | V.EcosPA8DcmP (100% identity) | V.EcoTT12ADcmP | |
| 17395 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoTT12ADcmP |
| 17400 | phosphohydrolase | |||
| 21150 | PerC family transcriptional regulator | |||
| 21155 | M | M.EcoTT12BORF19880P (100% identity) | M.EcoTT12AORF21155P | |
| 21160 | DUF1382 family protein | |||
| 25160 | DNA-binding transcriptional regulator Fis | |||
| 25165 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoTT12AORF25165P |
| 25170 | DUF2556 domain-containing protein | |||
| 25690 | ribulose-phosphate 3-epimerase | |||
| 25695 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoTT12ADamP |
| 25700 | cell division protein DamX | |||
| plasmid pO157 | ||||
| 28385 | 59 aa hypothetical protein | |||
| 28390 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoTT12AORF28390P | |
| 28395 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3080 | DUF1127 domain-containing protein | |||
| 3085 | R | Ecos1613GmrSP (100% identity) | EcoTT12AGmrSP | |
| 3090 | R | EcosPA8GmrSDP (55% identity) | EcoTT12AGmrDP | |
| 3095 | endoribonuclease SymE | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18880 | NinE family protein | |||
| 18885 | M | M.SflN97ORF8425P (100% identity) | GATC | M.EcoTT12AORF18885P |
| 18890 | recombination protein NinB | |||