|
Putative Salmonella enterica subsp. enterica serovar Heidelberg CVM 28322 RM systems
Ref: Zhao,S. et al. Genes (Basel) 11 (9), E1025 (2020)
REBASE ref # 31880
Sequence length: | GenBank #: | |
Chromosome: | 4,856,212 bp | CP051358 |
plasmid p28322-1: | 234,536 bp | CP051359 |
plasmid p28322-2: | 167,068 bp | CP051360 |
plasmid p28322-3: | 95,358 bp | CP051361 |
REBASE acronym: Sen28322
Org_num: 46903
All begin HFS63_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20095 | restriction endonuclease | |||
20100 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen28322ORF20105P |
20105 | M | M.Sens12373ORF19415P (100% identity) | GAGNNNNNNRTAYG | M.Sen28322ORF20105P |
20110 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen28322ORF20105P |
20115 | endoribonuclease SymE | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1820 | cell division protein DamX | |||
1825 | M | M.StyTDamP (100% identity) | GATC | M.Sen28322DamP |
1830 | ribulose-phosphate 3-epimerase | |||
2310 | DUF2556 family protein | |||
2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen28322ORF2315P |
2320 | DNA-binding transcriptional regulator Fis | |||
3200 | DUF2732 family protein | |||
3205 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen28322ORF3205P | |
3210 | replication endonuclease | |||
9350 | phosphohydrolase | |||
9355 | M | M.SenZ223DcmP (100% identity) | CCWGG | M.Sen28322DcmP |
9360 | V | V.StyTDcmP (100% identity) | V.Sen28322DcmP | |
9365 | drug/metabolite exporter YedA | |||
14435 | YqaJ viral recombinase family protein | |||
??? | M | M.SenS321ORF16155P (100% identity) | GATC | M.Sen28322ORF14440P |
14445 | DUF4060 family protein | |||
20235 | YebC/PmpR family DNA-binding transcriptional | |||
20240 | R | Sens12373ORF19550P (100% identity) | Sen28322ORF20240P | |
20245 | fosfomycin resistance glutathione transferase | |||
20265 | RM | Sens12373ORF19575P (100% identity) | GATCAG | Sen28322ORF20265P |
20270 | DEAD/DEAH box helicase | |||
plasmid p28322-1 | ||||
23680 | AAA family ATPase | |||
23685 | M | M.YpsF1ORFCP (85% identity) | M.Sen28322ORF23685P | |
23690 | 55 aa hypothetical protein | |||
24380 | 277 aa hypothetical protein | |||
24385 | M | M.YpsF1ORFDP (100% identity) | M.Sen28322ORF24385P | |
24390 | DNA-binding protein | |||
plasmid p28322-2 | ||||
24795 | 100 aa hypothetical protein | |||
24800 | M | M.YrupYR1ORFCP (100% identity) | M.Sen28322ORF24800P | |
24805 | 143 aa hypothetical protein | |||
plasmid p28322-3 | ||||
26000 | tellurite/colicin resistance protein | |||
26015 | M | M.Sen9102ORF23126P (100% identity) | M.Sen28322ORF26015P | |
26020 | recombination-associated protein RdgC | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
17505 | 33 aa hypothetical protein | |||
17510 | R | Sens12373ORF17180P (100% identity) | CAGAG | Sen28322ORF17515P |
17515 | M | M.SenZ223ORF2150P (100% identity) | CAGAG | M.Sen28322ORF17515P |
17520 | MFS transporter | |||
plasmid p28322-3 | ||||
26275 | modulator protein | |||
25755 | M | M.SenSL0052ORF25975P (100% identity) | AGACC | M.Sen28322ORF25755P |
25760 | R | SenSL0052ORF25975P (100% identity) | AGACC | Sen28322ORF25755P |
25765 | 250 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20090 | BrnT family toxin | |||
20095 | R | StyUK1MrrP (100% identity) | Sen28322MrrP | |
20100 | type I restriction-modification system |