Salmonella enterica subsp. enterica serovar Typhimurium R18.1078 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium R18.1078 RM systems
Ref: Chiou,C.-S. et al. unpublished
REBASE ref # 28599
| Sequence length: | GenBank #: | |
| Chromosome: | 4,972,399 bp | CP065567 |
| plasmid pR18.1078_p247k: | 247,565 bp | CP065568 |
| plasmid pR18.1078_p5.5k: | 5,570 bp | CP065570 |
| plasmid pR18.1078_p9.3k: | 107,790 bp | CP065569 |
REBASE acronym: Sen181078
Org_num: 46941
All begin I7656_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20030 | restriction endonuclease | |||
| 20035 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen181078ORF20040P |
| 20040 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen181078ORF20040P |
| 20045 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen181078ORF20040P |
| 20050 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.StyTDamP (100% identity) | GATC | M.Sen181078DamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 2315 | DUF2556 family protein | |||
| 2320 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen181078ORF2320P |
| 2325 | DNA-binding transcriptional regulator Fis | |||
| 3235 | DUF2732 family protein | |||
| 3240 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen181078ORF3240P | |
| 3245 | replication endonuclease | |||
| 6070 | ead/Ea22-like family protein | |||
| 6075 | M | M.StyTORF1914P (100% identity) | M.Sen181078ORF6075P | |
| 6080 | 92 aa hypothetical protein | |||
| 9385 | PerC family transcriptional regulator | |||
| ??? | M | M.SenceORFKP (100% identity) | M.Sen181078ORF9390P | |
| 9395 | RusA family crossover junction | |||
| 9635 | phosphohydrolase | |||
| 9640 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen181078DcmP |
| 9645 | V | V.StyUK1DcmP (100% identity) | V.Sen181078DcmP | |
| 9650 | drug/metabolite exporter YedA | |||
| 20190 | BREX system P-loop protein BrxC | |||
| 20195 | RM | StyUK1IV (100% identity) | GATCAG | Sen181078ORF20195P |
| 20200 | AAA family ATPase | |||
| 22100 | LexA family transcriptional regulator | |||
| 22105 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.Sen181078ORF22105P |
| 22110 | PerC family transcriptional regulator | |||
| plasmid pR18.1078_p247k | ||||
| 24930 | 56 aa hypothetical protein | |||
| 24935 | M | M.Sens770ORF21675P (100% identity) | M.Sen181078ORF24935P | |
| 24940 | thermonuclease family protein | |||
| 25395 | DNA-binding protein | |||
| 25400 | M | M.Sens770ORF22135P (100% identity) | M.Sen181078ORF25400P | |
| 25405 | 273 aa hypothetical protein | |||
| plasmid pR18.1078_p5.5k | ||||
| 25575 | Rop family plasmid primer RNA-binding protein | |||
| 25580 | R | Eco1H2ORF25450P (95% identity) | CCNGG | Sen181078ORF25585P |
| 25585 | M | M.StyD4I (100% identity) | CCNGG | M.Sen181078ORF25585P |
| 25590 | MbeD family mobilization/exclusion protein | |||
| plasmid pR18.1078_p9.3k | ||||
| 25975 | recombinase family protein | |||
| 25555 | R | Ssp3CORF24390P (100% identity) | CCWGG | Sen181078ORF25505P |
| 25505 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.Sen181078ORF25505P |
| 25510 | IS1 family transposase | |||
| 26070 | 103 aa hypothetical protein | |||
| 26075 | M | M.SspPIBORF23080P (100% identity) | M.Sen181078ORF26075P | |
| 26080 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17730 | 33 aa hypothetical protein | |||
| 17735 | R | StyUK1IP (99% identity) | CAGAG | Sen181078ORF17740P |
| 17740 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen181078ORF17740P |
| 17745 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20025 | BrnT family toxin | |||
| 20030 | R | StyUK1MrrP (100% identity) | Sen181078Mrr2P | |
| 20035 | type I restriction-modification system | |||