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Putative Citrobacter freundii Cfr-13 RM systems
Ref: Kohler,P. et al. Sci Rep 10 (1), 18580 (2020)
REBASE ref # 31663
Sequence length: | GenBank #: | |
Chromosome: | 5,050,163 bp | CP047773 |
plasmid pCfr13-1: | 85,777 bp | CP047774 |
plasmid pCfr13-2: | 81,066 bp | CP047775 |
REBASE acronym: CfrCfr13
Org_num: 46183
All begin GVI61_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
21290 | TIR domain-containing protein | |||
21295 | R | Mmo88ORFEP (99% identity) | CfrCfr13ORF21300P | |
21300 | M | M.Eco4282ORFDP (98% identity) | M.CfrCfr13ORF21300P | |
21305 | S | S.EcosAW17ORF20460P (100% identity) | S.CfrCfr13ORF21300P | |
21310 | 529 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1770 | cell division protein DamX | |||
1775 | M | M.Eco11104DamP (100% identity) | GATC | M.CfrCfr13DamP |
1780 | ribulose-phosphate 3-epimerase | |||
2270 | DUF2556 domain-containing protein | |||
2275 | M | M.Csp302ORFAP (100% identity) | ATGCAT | M.CfrCfr13ORF2275P |
2280 | DNA-binding transcriptional regulator Fis | |||
5740 | 118 aa hypothetical protein | |||
5745 | R | CpoC275ORFBP (100% identity) | C | CfrCfr13ORF5745P |
5750 | DNA primase | |||
6145 | DUF550 domain-containing protein | |||
6150 | M | M.Ceu3ORFCP (88% identity) | M.CfrCfr13ORF6150P | |
6155 | 83 aa hypothetical protein | |||
6240 | NinG family protein | |||
6245 | M | M.Cfr370ORF6320P (99% identity) | M.CfrCfr13ORF6245P | |
6250 | antitermination protein | |||
9695 | phosphohydrolase | |||
9700 | M | M.Cpo52230ORF18760P (100% identity) | CCWGG | M.CfrCfr13ORF9700P |
9705 | V | V.CpoK218ORF11815P (100% identity) | V.CfrCfr13ORF9700P | |
9710 | drug/metabolite exporter YedA | |||
18090 | 94 aa hypothetical protein | |||
18095 | M | M.Esp422ORF5740P (96% identity) | M.CfrCfr13ORF18095P | |
18100 | 72 aa hypothetical protein | |||
21195 | FAD-dependent oxidoreductase | |||
??? | R | Cpo5ORF14650P (100% identity) | CfrCfr13ORF21200P | |
21205 | helix-turn-helix domain-containing protein | |||
plasmid pCfr13-1 | ||||
24410 | recombination-associated protein RdgC | |||
24415 | M | M.CpoC01ORF25370P (99% identity) | M.CfrCfr13ORF24415P | |
24420 | 97 aa hypothetical protein | |||
plasmid pCfr13-2 | ||||
25125 | IS6-like element IS6100 family transposase | |||
25130 | R | YpsR1ORFAP (100% identity) | CCWGG | CfrCfr13ORF25135P |
??? | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.CfrCfr13ORF25135P |
25140 | IS1 family transposase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
15495 | integrase arm-type DNA-binding domain-containing | |||
15500 | M | M.Cfr2206ORF15970P (99% identity) | GCGCAG | M.CfrCfr13ORF15500P |
15505 | R | Cfr023IVP (41% identity) | GCGCAG | CfrCfr13ORF15500AP |
15510 | IS3 family transposase | |||
15515 | IS1 family transposase | |||
15520 | R | Cfr023IVP (57% identity) | GCGCAG | CfrCfr13ORF15500BP |
15525 | shufflon system plasmid conjugative transfer |