Salmonella enterica subsp. enterica serovar Typhimurium S304 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium S304 RM systems
Ref: Hua,X. and Yu,Y. unpublished
REBASE ref # 24129
| Sequence length: | GenBank #: | |
| Chromosome: | 4,937,766 bp | CP061126 |
| plasmid pS304_1: | 254,873 bp | CP061127 |
REBASE acronym: SenS304
Org_num: 46942
All begin IBY93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20275 | restriction endonuclease | |||
| 20280 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS304ORF20285P |
| 20285 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS304ORF20285P |
| 20290 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS304ORF20285P |
| 20295 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS304DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS304ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 6320 | ead/Ea22-like family protein | |||
| 6325 | M | M.StyTORF1914P (100% identity) | M.SenS304ORF6325P | |
| 6330 | 92 aa hypothetical protein | |||
| 9635 | PerC family transcriptional regulator | |||
| ??? | M | M.SenceORFKP (100% identity) | M.SenS304ORF9640P | |
| 9645 | RusA family crossover junction | |||
| 9885 | phosphohydrolase | |||
| 9890 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS304DcmP |
| 9895 | V | V.StyUK1DcmP (100% identity) | V.SenS304DcmP | |
| 9900 | drug/metabolite exporter YedA | |||
| 20435 | BREX system P-loop protein BrxC | |||
| 20440 | RM | StyUK1IV (100% identity) | GATCAG | SenS304ORF20440P |
| 20445 | AAA family ATPase | |||
| 21915 | LexA family transcriptional regulator | |||
| 21920 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.SenS304ORF21920P |
| 21925 | PerC family transcriptional regulator | |||
| plasmid pS304_1 | ||||
| 24650 | 55 aa hypothetical protein | |||
| 24655 | M | M.YpsF1ORFCP (100% identity) | M.SenS304ORF24655P | |
| 24660 | thermonuclease family protein | |||
| 25225 | 48 aa hypothetical protein | |||
| 25230 | M | M.YpsF1ORFBP (100% identity) | M.SenS304ORF25230P | |
| 25235 | 202 aa hypothetical protein | |||
| 25340 | DNA-binding protein | |||
| 25345 | M | M.YpsF1ORFDP (100% identity) | M.SenS304ORF25345P | |
| 25350 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17980 | 33 aa hypothetical protein | |||
| 17985 | R | StyUK1IP (99% identity) | CAGAG | SenS304ORF17990P |
| 17990 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS304ORF17990P |
| 17995 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20270 | BrnT family toxin | |||
| 20275 | R | StyUK1MrrP (100% identity) | SenS304Mrr2P | |
| 20280 | type I restriction-modification system | |||