Salmonella enterica subsp. enterica serovar Typhimurium S438 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium S438 RM systems
Ref: Hua,X. and Yu,Y. unpublished
REBASE ref # 24129
| Sequence length: | GenBank #: | |
| Chromosome: | 4,971,941 bp | CP061124 |
| plasmid pS438: | 253,817 bp | CP061125 |
REBASE acronym: SenS438
Org_num: 46943
All begin IBY95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20400 | restriction endonuclease | |||
| 20405 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenS438ORF20410P |
| 20410 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenS438ORF20410P |
| 20415 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenS438ORF20410P |
| 20420 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.StyTDamP (100% identity) | GATC | M.SenS438DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS438ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 6025 | thermonuclease family protein | |||
| 6030 | M | M.StyCORF187P (49% identity) | M.SenS438ORF6030P | |
| 6035 | IS6-like element IS26 family transposase | |||
| 6415 | ead/Ea22-like family protein | |||
| 6420 | M | M.StyTORF1914P (100% identity) | M.SenS438ORF6420P | |
| 6425 | 92 aa hypothetical protein | |||
| 9735 | PerC family transcriptional regulator | |||
| ??? | M | M.SenceORFKP (100% identity) | M.SenS438ORF9740P | |
| 9745 | RusA family crossover junction | |||
| 9985 | phosphohydrolase | |||
| 9990 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenS438DcmP |
| 9995 | V | V.StyUK1DcmP (100% identity) | V.SenS438DcmP | |
| 10000 | drug/metabolite exporter YedA | |||
| 20560 | BREX system P-loop protein BrxC | |||
| 20565 | RM | StyUK1IV (100% identity) | GATCAG | SenS438ORF20565P |
| 20570 | AAA family ATPase | |||
| 22035 | LexA family transcriptional regulator | |||
| 22040 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.SenS438ORF22040P |
| 22045 | PerC family transcriptional regulator | |||
| 23200 | 329 aa hypothetical protein | |||
| 23205 | M | M.SflFF38ORF15P (100% identity) | M.SenS438ORF23205P | |
| 23210 | replication endonuclease | |||
| plasmid pS438 | ||||
| 24865 | 55 aa hypothetical protein | |||
| 24870 | M | M.YpsF1ORFCP (100% identity) | M.SenS438ORF24870P | |
| 24875 | thermonuclease family protein | |||
| 25555 | 48 aa hypothetical protein | |||
| 25560 | M | M.YpsF1ORFBP (100% identity) | M.SenS438ORF25560P | |
| 25565 | 202 aa hypothetical protein | |||
| 25675 | DNA-binding protein | |||
| 25680 | M | M.YpsF1ORFDP (100% identity) | M.SenS438ORF25680P | |
| 25685 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18105 | 33 aa hypothetical protein | |||
| 18110 | R | StyUK1IP (99% identity) | CAGAG | SenS438ORF18115P |
| 18115 | M | M.StyUK1I (100% identity) | CAGAG | M.SenS438ORF18115P |
| 18120 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20395 | BrnT family toxin | |||
| 20400 | R | StyUK1MrrP (100% identity) | SenS438Mrr2P | |
| 20405 | type I restriction-modification system | |||