Escherichia coli THO-006 |
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Putative Escherichia coli THO-006 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 31386
| Sequence length: | GenBank #: | |
| Chromosome: | 5,052,545 bp | AP022533 |
| plasmid pTHO-006-1: | 111,171 bp | AP022534 |
| plasmid pTHO-006-2: | 101,966 bp | AP022535 |
REBASE acronym: EcoTHO006
Org_num: 45274
All begin THOESC006_, THOESC006_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39360 | 388 aa hypothetical protein | |||
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.EcoTHO006ORF39370P |
| 39380 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoTHO006ORF39370P |
| 39390 | R | Ecou021ORF19870P (99% identity) | RTACNNNNGTG | EcoTHO006ORF39370P |
| 39400 | endoribonuclease SymE | |||
| plasmid pTHO-006-2 | ||||
| 20940 | repressor TnpA | |||
| 20950 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoTHO006ORF20970P |
| 20960 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoTHO006ORF20970P |
| 20970 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoTHO006ORF20970P |
| 20980 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3510 | cell division protein DamX | |||
| 3520 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoTHO006DamP |
| 3530 | ribulose-phosphate 3-epimerase | |||
| 4650 | 59 aa hypothetical protein | |||
| 4660 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoTHO006ORF4660P |
| 4670 | DNA-binding protein Fis | |||
| 19480 | phosphohydrolase | |||
| 19490 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoTHO006DcmP |
| 19500 | V | V.EcosC25DcmP (100% identity) | V.EcoTHO006DcmP | |
| 19510 | inner membrane transporter YedA | |||
| 26240 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| 26250 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoTHO006ORF26250P |
| 26260 | 65 aa hypothetical protein | |||
| 40030 | mcrBC 5-methylcytosine restriction system | |||
| 40040 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoTHO006ORF40050P |
| 40050 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoTHO006ORF40050P |
| 40060 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoTHO006ORF40050P |
| 40070 | 141 aa hypothetical protein | |||
| plasmid pTHO-006-1 | ||||
| 10150 | 308 aa hypothetical protein | |||
| 10160 | M | M.Sfl7ORF23565P (100% identity) | M.EcoTHO006ORF10160P | |
| 10170 | 73 aa hypothetical protein | |||
| plasmid pTHO-006-2 | ||||
| 20180 | 308 aa hypothetical protein | |||
| 20190 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoTHO006ORF20190P |
| 20200 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40010 | 84 aa hypothetical protein | |||
| 40020 | R | EcosS3McrBP (100% identity) | EcoTHO006McrBP | |
| 40030 | R | EcosS9McrCP (100% identity) | EcoTHO006McrCP | |
| 40040 | 579 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27900 | protein ninX | |||
| 27910 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoTHO006ORF27910P |
| 27920 | protein ninB | |||