Shigella flexneri M2901 |
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Putative Shigella flexneri M2901 RM systems
Ref: Guglielmino,C.J.D. et al. Eur. J. Clin. Microbiol. Infect. Dis. (2020) In press
REBASE ref # 31316
| Sequence length: | GenBank #: | |
| Chromosome: | 4,682,307 bp | CP058589 |
| plasmid pM2901: | 81,694 bp | CP058590 |
| plasmid unnamed2: | 224,303 bp | CP058591 |
REBASE acronym: SflM2901
Org_num: 44787
All begin HXW98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23185 | endoribonuclease SymE | |||
| 23190 | S | S.SflPE577ORF23095P (100% identity) | GTANNNNNNNNGTCY | S.SflM2901ORF23195P |
| 23195 | M | M.SspS13ORF3945P (100% identity) | GTANNNNNNNNGTCY | M.SflM2901ORF23195P |
| 23200 | R | SflTORF4636P (100% identity) | GTANNNNNNNNGTCY | SflM2901ORF23195P |
| 23205 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11025 | drug/metabolite exporter YedA | |||
| 11030 | V | V.SflTDcmP (100% identity) | V.SflM2901DcmP | |
| 11035 | M | M.SflTDcmP (100% identity) | CCWGG | M.SflM2901DcmP |
| 11040 | phosphohydrolase | |||
| 17640 | DNA-binding transcriptional regulator Fis | |||
| 17645 | M | M.SflTORF3517P (100% identity) | ATGCAT | M.SflM2901ORF17645P |
| 17650 | DUF2556 family protein | |||
| 18190 | ribulose-phosphate 3-epimerase | |||
| 18195 | M | M.SflTDamP (100% identity) | GATC | M.SflM2901DamP |
| 18200 | cell division protein DamX | |||
| plasmid pM2901 | ||||
| 23580 | 97 aa hypothetical protein | |||
| 23585 | M | M.Xca80ORFEP (100% identity) | M.SflM2901ORF23585P | |
| 23590 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 24335 | 73 aa hypothetical protein | |||
| 24340 | M | M.SflP099ORF24190P (100% identity) | M.SflM2901ORF24340P | |
| 24345 | 103 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1625 | recombination protein NinB | |||
| 1630 | M | M.Sbo4881ORF19760P (100% identity) | M.SflM2901ORF1630P | |
| 1635 | protein ninD | |||