Escherichia coli RHB04-C08 |
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Putative Escherichia coli RHB04-C08 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,832,699 bp | CP058014 |
| plasmid pRHB04-C08_2: | 100,878 bp | CP058015 |
| plasmid pRHB04-C08_3: | 96,304 bp | CP058016 |
REBASE acronym: Eco4C08
Org_num: 44075
All begin HVV70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2180 | 428 aa hypothetical protein | |||
| 2185 | S | S.EcosC41ORF5210P (100% identity) | GCAGNNNNNTGT | S.Eco4C08ORF2190P |
| 2190 | M | M.EcosC41ORF5210P (100% identity) | GCAGNNNNNTGT | M.Eco4C08ORF2190P |
| 2195 | 128 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1945 | porin family protein | |||
| 1950 | R | SflFF24DptFP (99% identity) | Eco4C08DptFP | |
| 1955 | DNA phosphorothioation-dependent restriction | |||
| 1950 | DNA phosphorothioation-dependent restriction | |||
| 1955 | R | SflFF24DptGP (100% identity) | Eco4C08DptGP | |
| 1955 | DNA phosphorothioation-dependent restriction | |||
| 1960 | R | EcoH66DptHP (100% identity) | Eco4C08DptHP | |
| 1965 | accessory gene regulator B family protein | |||
| 1980 | DNA sulfur modification protein DndE | |||
| 1985 | M | M.SflFF24DndDP (99% identity) | M.Eco4C08DndDP | |
| 1990 | DNA phosphorothioation system sulfurtransferase | |||
| 1985 | DNA sulfur modification protein DndD | |||
| 1990 | M | M.SflFF24DndCP (100% identity) | M.Eco4C08DndCP | |
| 1995 | DNA sulfur modification protein DndB | |||
| 1990 | DNA phosphorothioation system sulfurtransferase | |||
| 1995 | M | M.SflFF24DndBP (100% identity) | M.Eco4C08DndBP | |
| 2000 | osmoprotectant transport activator ProQ | |||
| 2205 | AAA family ATPase | |||
| 2210 | R | SflN101ORF11875P (100% identity) | Eco4C08ORF2210P | |
| 2215 | HNH endonuclease | |||
| 4155 | PerC family transcriptional regulator | |||
| 4160 | M | M.EcoST05ORF2750P (100% identity) | GATC | M.Eco4C08ORF4160P |
| 4165 | LexA family transcriptional regulator | |||
| 4200 | TrmB family transcriptional regulator | |||
| 4205 | M | M.EcoXDLORF15370P (62% identity) | M.Eco4C08ORF4205AP | |
| 4210 | IS3 family transposase | |||
| 4215 | M | M.Eco9041ORF3485P (35% identity) | M.Eco4C08ORF4205BP | |
| 4220 | phage holin, lambda family | |||
| 7130 | TraR/DksA family transcriptional regulator | |||
| 7135 | M | M.EspP049ORF3208P (99% identity) | GATC | M.Eco4C08ORF7135P |
| 7140 | replication endonuclease | |||
| 12960 | drug/metabolite exporter YedA | |||
| 12965 | V | V.SsoSE61DcmP (100% identity) | V.Eco4C08DcmP | |
| 12970 | M | M.Eco20E4C05DcmP (100% identity) | CCWGG | M.Eco4C08DcmP |
| 12975 | phosphohydrolase | |||
| 19715 | DNA-binding transcriptional regulator Fis | |||
| 19720 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco4C08ORF19720P |
| 19725 | DUF2556 family protein | |||
| 20270 | ribulose-phosphate 3-epimerase | |||
| 20275 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4C08DamP |
| 20280 | cell division protein DamX | |||
| plasmid pRHB04-C08_2 | ||||
| 23540 | 73 aa hypothetical protein | |||
| 23545 | M | M.Eco36C05ORF23990P (100% identity) | M.Eco4C08ORF23545P | |
| 23550 | 103 aa hypothetical protein | |||
| plasmid pRHB04-C08_3 | ||||
| 23770 | 103 aa hypothetical protein | |||
| 23775 | M | M.Sso8ORF23800P (100% identity) | SAY | M.Eco4C08ORF23775P |
| 23780 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2195 | 128 aa hypothetical protein | |||
| 2200 | R | Ecows53McrCP (100% identity) | Eco4C08McrCP | |
| 2205 | R | EcoSMBLMcrBP (100% identity) | Eco4C08McrBP | |
| 2210 | HNH endonuclease | |||