Escherichia coli RHB22-C08 |
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Putative Escherichia coli RHB22-C08 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,890,728 bp | CP057580 |
| plasmid pRHB22-C08_2: | 54,794 bp | CP057581 |
REBASE acronym: Eco22C08
Org_num: 43311
All begin HVX86_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20050 | adenine/cytosine-specific restriction | |||
| 20055 | R | EcoES5ORF3915P (99% identity) | Eco22C08ORF20060P | |
| 20060 | M | M.EcoES5ORF3915P (99% identity) | M.Eco22C08ORF20060P | |
| 20065 | S | S.MspM4CORF135P (47% identity) | S.Eco22C08ORF20060P | |
| 20070 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1800 | cell division protein DamX | |||
| 1805 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco22C08DamP |
| 1810 | ribulose-phosphate 3-epimerase | |||
| 2335 | DUF2556 family protein | |||
| 2340 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.Eco22C08ORF2340P |
| 2345 | DNA-binding transcriptional regulator Fis | |||
| 6945 | recombination protein NinB | |||
| 6950 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco22C08ORF6950P |
| 6955 | NinE family protein | |||
| 9070 | phosphohydrolase | |||
| 9075 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco22C08DcmP |
| 9080 | V | V.SsoSE61DcmP (100% identity) | V.Eco22C08DcmP | |
| 9085 | drug/metabolite exporter YedA | |||
| 14965 | replication endonuclease | |||
| 14970 | M | M.Eco883493ORFBP (100% identity) | GATC | M.Eco22C08ORF14970P |
| 14975 | TraR/DksA family transcriptional regulator | |||
| 19795 | LexA family transcriptional regulator | |||
| 19800 | M | M.Sso30ORF925P (100% identity) | GATC | M.Eco22C08ORF19800P |
| 19805 | PerC family transcriptional regulator | |||
| plasmid pRHB22-C08_2 | ||||
| 23380 | 73 aa hypothetical protein | |||
| 23385 | M | M.SflN92ORF24820P (100% identity) | M.Eco22C08ORF23385P | |
| 23390 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20045 | GTPase | |||
| 20050 | R | Ssp28760MrrP (100% identity) | Eco22C08MrrP | |
| 20055 | type I restriction-modification system | |||
| 20070 | endoribonuclease SymE | |||
| 20075 | R | Ssp28760McrBP (100% identity) | Eco22C08McrBP | |
| 20080 | R | Ssp28760McrCP (100% identity) | Eco22C08McrCP | |
| 20085 | DEAD/DEAH box helicase | |||