Escherichia coli RHB22-C23 |
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Putative Escherichia coli RHB22-C23 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,952,851 bp | CP057570 |
| plasmid pRHB22-C23_2: | 121,488 bp | CP057571 |
| plasmid pRHB22-C23_3: | 92,191 bp | CP057572 |
REBASE acronym: Eco22C23
Org_num: 43314
All begin HVX90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 570 | 127 aa hypothetical protein | |||
| 575 | R | Eco22C02ORF580P (100% identity) | Eco22C23ORF580P | |
| 580 | M | M.Eco22C02ORF580P (100% identity) | M.Eco22C23ORF580P | |
| 585 | S | S.Eco22C02ORF580P (100% identity) | S.Eco22C23ORF580P | |
| 590 | thymidylate synthase | |||
| 9385 | tyrosine-type recombinase/integrase | |||
| 9390 | R | EcoXJ63ORF9345P (100% identity) | Eco22C23ORF9390P | |
| 9395 | M48 family metallopeptidase | |||
| 20190 | adenine/cytosine-specific restriction | |||
| 20195 | R | EcoXJ63ORF19820P (100% identity) | AACNNNNNNGTGC | Eco22C23ORF20200P |
| 20200 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco22C23ORF20200P |
| 20205 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco22C23ORF20200P |
| 20210 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2075 | cell division protein DamX | |||
| 2080 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco22C23DamP |
| 2085 | ribulose-phosphate 3-epimerase | |||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.Eco22C02ORF2610P (100% identity) | ATGCAT | M.Eco22C23ORF2610P |
| 2615 | DNA-binding transcriptional regulator Fis | |||
| 9060 | phosphohydrolase | |||
| 9065 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco22C23DcmP |
| 9070 | V | V.SsoSE61DcmP (100% identity) | V.Eco22C23DcmP | |
| 9075 | drug/metabolite exporter YedA | |||
| 11410 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco22C23ORF11415P | |
| 11420 | 60 aa hypothetical protein | |||
| 15300 | replication endonuclease | |||
| 15305 | M | M.Eco39C21ORF15550P (100% identity) | GATC | M.Eco22C23ORF15305P |
| 15310 | TraR/DksA family transcriptional regulator | |||
| 18345 | 321 aa hypothetical protein | |||
| 18350 | R | Sso8033ORF3755P (100% identity) | Eco22C23ORF18355P | |
| 18355 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco22C23ORF18355P | |
| 18360 | 257 aa hypothetical protein | |||
| 18485 | phage lysis protein EssD | |||
| 18490 | M | M.Sso63633ORF22290P (100% identity) | M.Eco22C23ORF18490P | |
| 18495 | TrmB family transcriptional regulator | |||
| plasmid pRHB22-C23_2 | ||||
| 24115 | 73 aa hypothetical protein | |||
| 24120 | M | M.SflN92ORF24820P (100% identity) | M.Eco22C23ORF24120P | |
| 24125 | 101 aa hypothetical protein | |||
| plasmid pRHB22-C23_3 | ||||
| 24640 | 216 aa hypothetical protein | |||
| 24645 | M | M.SenThORF23620P (100% identity) | M.Eco22C23ORF24645P | |
| 24650 | glutamine--tRNA ligase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20185 | GTPase | |||
| 20190 | R | SenHNK130MrrP (100% identity) | Eco22C23MrrP | |
| 20195 | type I restriction-modification system | |||
| 20210 | endoribonuclease SymE | |||
| 20215 | R | SenHNK130McrBP (100% identity) | Eco22C23McrBP | |
| 20220 | R | SenHNK130McrCP (100% identity) | Eco22C23McrCP | |
| 20225 | DEAD/DEAH box helicase | |||