Escherichia coli RHB29-C16 |
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Putative Escherichia coli RHB29-C16 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,124,691 bp | CP057342 |
| plasmid pRHB29-C16_2: | 119,787 bp | CP057343 |
REBASE acronym: Eco29C16
Org_num: 43106
All begin HVY65_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | replication endonuclease | |||
| 15 | R | EcoR7ORF1275P (100% identity) | TGGCCA | Eco29C16ORF20P |
| 20 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.Eco29C16ORF20P |
| 25 | phage portal protein | |||
| 930 | phosphohydrolase | |||
| 935 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.Eco29C16DcmP |
| 940 | V | V.SflSTLE3DcmP (100% identity) | V.Eco29C16DcmP | |
| 945 | drug/metabolite exporter YedA | |||
| 2975 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco29C16ORF2980P | |
| 2985 | 60 aa hypothetical protein | |||
| 5135 | 343 aa hypothetical protein | |||
| 5140 | M | M.Eco392ORF5450P (100% identity) | M.Eco29C16ORF5140P | |
| 5145 | phage replication protein | |||
| 11280 | transposase | |||
| 11285 | R | EcoA41ORF21415P (97% identity) | GGCGGA | Eco29C16ORF11290P |
| ??? | M | M1.EcoA41ORF21415P (99% identity) | GGCGGA | M1.Eco29C16ORF11290P |
| 11295 | M | M2.EcoA41ORF21415P (100% identity) | GGCGGA | M2.Eco29C16ORF11290P |
| 11300 | conjugal transfer protein TraG N-terminal | |||
| 13485 | DNA-binding transcriptional regulator Fis | |||
| 13490 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco29C16ORF13490P |
| 13495 | DUF2556 family protein | |||
| 14040 | ribulose-phosphate 3-epimerase | |||
| 14045 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco29C16DamP |
| 14050 | cell division protein DamX | |||
| 16920 | replication endonuclease | |||
| 16925 | M | M.SenS1905ORF15P (100% identity) | M.Eco29C16ORF16925P | |
| 16930 | R | Eco4136ORFDP (100% identity) | Eco29C16ORF16925P | |
| 16935 | DUF262 domain-containing protein | |||
| 19560 | DEAD/DEAH box helicase family protein | |||
| 19565 | M | M.EcofEC1ORF1985P (100% identity) | M.Eco29C16ORF19565P | |
| 19570 | DUF3780 domain-containing protein | |||
| plasmid pRHB29-C16_2 | ||||
| 24915 | 103 aa hypothetical protein | |||
| 24920 | M | M.EcoV04ORF25795P (100% identity) | SAY | M.Eco29C16ORF24920P |
| 24925 | single-stranded DNA-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5015 | isocitrate dehydrogenase | |||
| 5020 | R | EcosEC27McrCP (100% identity) | Eco29C16McrCP | |
| 5025 | R | EcoteDMcrBP (100% identity) | Eco29C16McrBP | |
| 5030 | recombinase family protein | |||