Escherichia coli RHB35-C24 |
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Putative Escherichia coli RHB35-C24 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,938,104 bp | CP057141 |
| plasmid pRHB35-C24_2: | 89,539 bp | CP057142 |
REBASE acronym: Eco35C24
Org_num: 43148
All begin HVZ42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20675 | adenine/cytosine-specific restriction | |||
| 20680 | R | Eco42C22ORF11485P (100% identity) | Eco35C24ORF20685P | |
| 20685 | M | M.Eco40C21ORF20130P (100% identity) | M.Eco35C24ORF20685P | |
| 20690 | S | S.Eco40C21ORF20130P (100% identity) | S.Eco35C24ORF20685P | |
| 20695 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 410 | osmoprotectant transport activator ProQ | |||
| 415 | M | M.SflFF24DndBP (100% identity) | M.Eco35C24DndBP | |
| 420 | DNA phosphorothioation system sulfurtransferase | |||
| 415 | DNA sulfur modification protein DndB | |||
| 420 | M | M.SflFF24DndCP (100% identity) | M.Eco35C24DndCP | |
| 425 | DNA sulfur modification protein DndD | |||
| 420 | DNA phosphorothioation system sulfurtransferase | |||
| 425 | M | M.SflFF24DndDP (100% identity) | M.Eco35C24DndDP | |
| 430 | DNA sulfur modification protein DndE | |||
| 425 | DNA sulfur modification protein DndD | |||
| 430 | M | M.SflFF24DndEP (100% identity) | M.Eco35C24DndEP | |
| 435 | DGQHR domain-containing protein | |||
| 495 | 113 aa hypothetical protein | |||
| 500 | R | Eco21C07DptHP (100% identity) | Eco35C24DptHP | |
| 505 | DNA phosphorothioation-dependent restriction | |||
| 500 | DNA phosphorothioation-dependent restriction | |||
| 505 | R | SenLY67DptGP (100% identity) | Eco35C24DptGP | |
| 510 | DNA phosphorothioation-dependent restriction | |||
| 505 | DNA phosphorothioation-dependent restriction | |||
| 510 | R | SenLY67DptFP (100% identity) | Eco35C24DptFP | |
| 515 | porin family protein | |||
| 1965 | cell division protein DamX | |||
| 1970 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco35C24DamP |
| 1975 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.Eco40C21ORF2275P (100% identity) | ATGCAT | M.Eco35C24ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 6390 | DUF1382 family protein | |||
| 6395 | M | M.EfeC23ORF6940P (100% identity) | M.Eco35C24ORF6395P | |
| 6400 | PerC family transcriptional regulator | |||
| 9770 | phosphohydrolase | |||
| 9775 | M | M.Eco40C21DcmP (100% identity) | CCWGG | M.Eco35C24DcmP |
| 9780 | V | V.Ecostr9DcmP (74% identity) | V.Eco35C24DcmP | |
| 9785 | drug/metabolite exporter YedA | |||
| 11615 | TrmB family transcriptional regulator | |||
| 11620 | M | M.EcoV04ORF12550P (100% identity) | M.Eco35C24ORF11620P | |
| 11625 | 92 aa hypothetical protein | |||
| 16195 | NinE family protein | |||
| 16200 | M | M.Eco21C07ORF15950P (100% identity) | GATC | M.Eco35C24ORF16200P |
| 16205 | recombination protein NinB | |||
| 20895 | HNH endonuclease | |||
| 20900 | R | Ecoi362ORF3874P (100% identity) | Eco35C24ORF20900P | |
| 20905 | 59 aa hypothetical protein | |||
| plasmid pRHB35-C24_2 | ||||
| 24210 | 73 aa hypothetical protein | |||
| 24215 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco35C24ORF24215P | |
| 24220 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20670 | GTPase | |||
| 20675 | R | Ssp28760MrrP (100% identity) | Eco35C24MrrP | |
| 20680 | type I restriction-modification system | |||
| 20695 | endoribonuclease SymE | |||
| 20700 | R | Eco40C21McrBP (100% identity) | Eco35C24McrBP | |
| 20705 | R | Eco40C21McrCP (100% identity) | Eco35C24McrCP | |