Shigella sonnei SE6-1 |
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Putative Shigella sonnei SE6-1 RM systems
Ref: Lee,J.-H. et al. unpublished
REBASE ref # 30797
Complete sequence: 4,762,774 bp
GenBank #: CP055292
REBASE acronym: SsoSE61
Org_num: 41508
All begin HUX90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6535 | DUF4942 domain-containing protein | |||
| 6540 | M | M.SflFF22ORF2075P (100% identity) | GACNNNNNNRTAAY | M.SsoSE61ORF6540P |
| 6545 | S | S.SflFF22ORF2075P (100% identity) | GACNNNNNNRTAAY | S.SsoSE61ORF6540P |
| 6550 | R | SflFF22ORF2075P (99% identity) | GACNNNNNNRTAAY | SsoSE61ORF6540P |
| 6560 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11145 | cell division protein DamX | |||
| 11150 | M | M.UbaC1152DamP (100% identity) | GATC | M.SsoSE61DamP |
| 11155 | ribulose-phosphate 3-epimerase | |||
| 11700 | DUF2556 family protein | |||
| 11705 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.SsoSE61ORF11705P |
| 11710 | DNA-binding transcriptional regulator Fis | |||
| 18240 | phosphohydrolase | |||
| 18245 | M | M.SflN101DcmP (100% identity) | CCWGG | M.SsoSE61DcmP |
| 18250 | V | V.SflN92DcmP (100% identity) | V.SsoSE61DcmP | |
| 18255 | drug/metabolite exporter YedA | |||
| 20215 | DUF977 family protein | |||
| ??? | M | M.SflSTLE4ORF10535P (100% identity) | M.SsoSE61ORF20220P | |
| 20225 | 95 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 160 | isocitrate dehydrogenase | |||
| 165 | R | SsoSE61ORF22640P (100% identity) | YCGR | SsoSE61ORF165P |
| 170 | site-specific DNA recombinase | |||
| 22635 | isocitrate dehydrogenase | |||
| 22640 | R | SsoSE61ORF165P (100% identity) | YCGR | SsoSE61ORF22640P |
| 22645 | site-specific DNA recombinase | |||