Escherichia coli SCU-487 |
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Putative Escherichia coli SCU-487 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
Complete sequence: 4,964,641 bp
GenBank #: CP054454
REBASE acronym: EcoSCU487
Org_num: 40721
All begin HPE46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21465 | restriction endonuclease | |||
| 21470 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoSCU487ORF21470P |
| 21475 | S | S1.EcoC9775I (79% identity) | RTACNNNNGTG | S.EcoSCU487ORF21470P |
| 21480 | R | EcoSF088ORF20515P (99% identity) | RTACNNNNGTG | EcoSCU487ORF21470P |
| 21485 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3140 | cell division protein DamX | |||
| ??? | M | M.Sdy10956DamP (98% identity) | GATC | M.EcoSCU487DamP |
| 3150 | ribulose-phosphate 3-epimerase | |||
| 3745 | DUF2556 family protein | |||
| 3750 | M | M.PmeBin470ORFAP (99% identity) | ATGCAT | M.EcoSCU487ORF3750P |
| 3755 | DNA-binding transcriptional regulator Fis | |||
| 7290 | carbon starvation induced protein CsiD | |||
| 7295 | M | M.Eco1324ORF13805P (99% identity) | M.EcoSCU487ORF7295P | |
| 7300 | AAA family ATPase | |||
| 7360 | 330 aa hypothetical protein | |||
| 7365 | M | M.EcoQ5ORF18400P (100% identity) | GATC | M.EcoSCU487ORF7365P |
| 7370 | LexA family transcriptional regulator | |||
| 7400 | 67 aa hypothetical protein | |||
| 7405 | M | M.Sso63633ORF22290P (100% identity) | M.EcoSCU487ORF7405P | |
| 7410 | class II holin family protein | |||
| 11060 | phosphohydrolase | |||
| 11065 | M | M.EcoXMDcmP (99% identity) | CCWGG | M.EcoSCU487DcmP |
| 11070 | V | V.SflC32DcmP (74% identity) | V.EcoSCU487DcmP | |
| 11075 | drug/metabolite exporter YedA | |||
| 14310 | DUF1737 domain-containing protein | |||
| 14330 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSCU487ORF14330P |
| 14335 | TrmB family transcriptional regulator | |||
| 17090 | replication endonuclease | |||
| 17095 | M | M.Ecoppa1ORF11250P (99% identity) | GATC | M.EcoSCU487ORF17095P |
| 17100 | TraR/DksA family transcriptional regulator | |||
| 21695 | McrC family protein | |||
| ??? | R | EcosS9ORF2810P (96% identity) | GGTCTC | EcoSCU487ORF21710P |
| 21710 | M | M.EcoSME98ORF8080P (40% identity) | GGTCTC | M2.EcoSCU487ORF21710P |
| 21715 | M | M1.EcoBone8ORF17365P (93% identity) | GGTCTC | M1.EcoSCU487ORF21710P |
| 21720 | ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10860 | shufflon system plasmid conjugative transfer | |||
| 10865 | R | Sensp14178ORF9290P (99% identity) | EcoSCU487ORF10870P | |
| 10870 | M | M.Eco20645ORF11155P (98% identity) | M.EcoSCU487ORF10870P | |
| 10875 | integrase arm-type DNA-binding domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21685 | IS3 family transposase | |||
| 21690 | R | EcosS3McrBP (100% identity) | EcoSCU487McrBP | |
| 21695 | R | EcosS9McrCP (99% identity) | EcoSCU487McrCP | |
| 21700 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15195 | NinE family protein | |||
| 15200 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSCU487ORF15200P |
| 15205 | recombination protein NinB | |||