Escherichia coli Dam/Dcm |
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Putative Escherichia coli Dam/Dcm RM systems
Ref: Sibley,M. and Raleigh,E.A. unpublished
REBASE ref # 35102
Complete sequence: 4,628,041 bp
GenBank #: CP053603
REBASE acronym: EcoDD
Org_num: 61170
All begin HO395_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21935 | endoribonuclease SymE | |||
| 21940 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDDI |
| 21945 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDDI |
| 21950 | R | EcoWF55T2ORF18815P (100% identity) | AACNNNNNNGTGC | EcoDDIP |
| 21955 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9910 | drug/metabolite exporter YedA | |||
| 9915 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoDDDcmP |
| 9920 | M | M.EcoBH212DcmP (100% identity) | CCWGG | M.EcoDDDcmP |
| 9925 | phosphohydrolase | |||
| 15710 | IS1 family transposase | |||
| 15715 | M | M.UbaC1152DamP (75% identity) | M.EcoDDDamP | |
| 15720 | ribulose-phosphate 3-epimerase | |||
| 16335 | DUF2556 family protein | |||
| 16340 | M | M.EcoRR1ORF16650P (100% identity) | ATGCAT | M.EcoDDORF16340P |
| 16345 | DNA-binding transcriptional regulator Fis | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21950 | type I restriction-modification system | |||
| 21955 | R | SenHNK130MrrP (100% identity) | EcoDDMrrP | |
| 21960 | GTPase | |||