Salmonella enterica subsp. enterica serovar Typhimurium SS2017 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium SS2017 RM systems
Ref: Meleshko,A. et al. unpublished
REBASE ref # 30680
| Sequence length: | GenBank #: | |
| Chromosome: | 4,881,794 bp | CP053870 |
| plasmid pSS2017-1: | 95,180 bp | CP053871 |
| plasmid pSS2017-2a: | 86,908 bp | CP053872 |
| plasmid pSS2017-2b: | 86,908 bp | CP053873 |
REBASE acronym: SenSS2017
Org_num: 41145
All begin HPY00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23270 | endoribonuclease SymE | |||
| 23275 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSS2017ORF23280P |
| 23280 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSS2017ORF23280P |
| 23285 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSS2017ORF23280P |
| 23290 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9960 | drug/metabolite exporter YedA | |||
| 9965 | V | V.StyUK1DcmP (100% identity) | V.SenSS2017DcmP | |
| 9970 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSS2017DcmP |
| 9975 | phosphohydrolase | |||
| 10205 | RusA family crossover junction | |||
| 10210 | M | M.StyUK1V (100% identity) | GATC | M.SenSS2017ORF10210P |
| 10215 | PerC family transcriptional regulator | |||
| 13540 | DUF550 domain-containing protein | |||
| 13545 | M | M.Sens29958ORF6205P (100% identity) | M.SenSS2017ORF13545P | |
| 13550 | ead/Ea22-like family protein | |||
| 14155 | replication endonuclease | |||
| 14160 | M | M.StySopEDamP (100% identity) | M.SenSS2017ORF14160P | |
| 14165 | TraR/DksA family transcriptional regulator | |||
| 17535 | DNA-binding transcriptional regulator Fis | |||
| 17540 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSS2017ORF17540P |
| 17545 | DUF2556 family protein | |||
| 18030 | ribulose-phosphate 3-epimerase | |||
| 18035 | M | M.StyTDamP (100% identity) | GATC | M.SenSS2017DamP |
| 18040 | cell division protein DamX | |||
| 23120 | AAA family ATPase | |||
| 23125 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSS2017ORF23125P |
| 23130 | BREX system P-loop protein BrxC | |||
| plasmid pSS2017-1 | ||||
| 23915 | 73 aa hypothetical protein | |||
| 23920 | M | M.StyUK1ORFAP (100% identity) | M.SenSS2017ORF23920P | |
| 23925 | 118 aa hypothetical protein | |||
| plasmid pSS2017-2a | ||||
| 24330 | 104 aa hypothetical protein | |||
| 24335 | M | M.SspPIBORF23080P (100% identity) | M.SenSS2017ORF24335P | |
| 24340 | 73 aa hypothetical protein | |||
| plasmid pSS2017-2b | ||||
| 24835 | 104 aa hypothetical protein | |||
| 24840 | M | M.SspPIBORF23080P (100% identity) | M.SenSS2017ORF24840P | |
| 24845 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1805 | MFS transporter | |||
| 1810 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSS2017ORF1810P |
| 1815 | R | StyUK1IP (99% identity) | CAGAG | SenSS2017ORF1810P |
| 1820 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23285 | type I restriction-modification system | |||
| 23290 | R | StyUK1MrrP (100% identity) | SenSS2017MrrP | |
| 23295 | BrnT family toxin | |||