Escherichia coli O157:H7 OK1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O157:H7 OK1 RM systems
Ref: Bono,J.L. unpublished
REBASE ref # 30303
| Sequence length: | GenBank #: | |
| Chromosome: | 5,459,741 bp | CP038313 |
| plasmid pOK1-1: | 97,630 bp | CP038314 |
REBASE acronym: EcoOK1
Org_num: 40046
All begin E3173_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24620 | DUF262 domain-containing protein | |||
| 24625 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoOK1ORF24630P |
| 24630 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoOK1ORF24630P |
| 24635 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoOK1ORF24630P |
| 24640 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2335 | cell division protein DamX | |||
| 2340 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoOK1DamP |
| 2345 | ribulose-phosphate 3-epimerase | |||
| 2860 | DUF2556 domain-containing protein | |||
| 2865 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoOK1ORF2865P |
| 2870 | DNA-binding transcriptional regulator Fis | |||
| 8830 | recombination protein NinB | |||
| 8835 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoOK1ORF8835P |
| 8840 | NinE family protein | |||
| 10315 | phosphohydrolase | |||
| 10320 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoOK1DcmP |
| 10325 | V | V.EcosPA8DcmP (99% identity) | V.EcoOK1DcmP | |
| 10330 | drug/metabolite exporter YedA | |||
| 14225 | DUF1367 family protein | |||
| 14230 | R | Ecos15739ORF2910P (100% identity) | EcoOK1ORF14240P | |
| 14235 | 329 aa hypothetical protein | |||
| 14240 | M | M.Ecos15739ORF2910P (100% identity) | M.EcoOK1ORF14240P | |
| 14245 | 81 aa hypothetical protein | |||
| 15115 | 61 aa hypothetical protein | |||
| 15130 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoOK1ORF15130P | |
| 15135 | TrmB family transcriptional regulator | |||
| 24860 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoOK1ORF24860P |
| 24865 | DEAD/DEAH box helicase | |||
| 24895 | N-acetylneuraminate epimerase | |||
| 24900 | R | Ecos1613ORF26795P (100% identity) | EcoOK1ORF24900P | |
| 24905 | transposase | |||
| plasmid pOK1-1 | ||||
| 28095 | 73 aa hypothetical protein | |||
| 28100 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoOK1ORF28100P | |
| 28105 | 59 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17610 | NinE family protein | |||
| 17615 | M | M.SflN97ORF8425P (100% identity) | GATC | M.EcoOK1ORF17615P |
| 17620 | recombination protein NinB | |||