Escherichia coli SCU-108 |
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Putative Escherichia coli SCU-108 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,050,588 bp | CP051735 |
| plasmid pSCU-108-1: | 116,897 bp | CP051736 |
| plasmid pSCU-108-2: | 71,625 bp | CP051737 |
REBASE acronym: EcoSCU108
Org_num: 40059
All begin HHJ26_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3170 | drug/metabolite exporter YedA | |||
| 3175 | V | V.EcosC25DcmP (100% identity) | V.EcoSCU108DcmP | |
| 3180 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoSCU108DcmP |
| 3185 | phosphohydrolase | |||
| 7340 | LexA family transcriptional regulator | |||
| 7345 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoSCU108ORF7345P |
| 7350 | PerC family transcriptional regulator | |||
| 10940 | DNA-binding transcriptional regulator Fis | |||
| 10945 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCU108ORF10945P |
| 10950 | DUF2556 family protein | |||
| 11540 | ribulose-phosphate 3-epimerase | |||
| 11545 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU108DamP |
| 11550 | cell division protein DamX | |||
| 16810 | 97 aa hypothetical protein | |||
| 16815 | R | EcoSCU123ORF16820P (100% identity) | EcoSCU108ORF16815P | |
| 16820 | 607 aa hypothetical protein | |||
| 16825 | histidine kinase | |||
| 16830 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoSCU108ORF16830P |
| 16835 | 174 aa hypothetical protein | |||
| 17080 | IS3 family transposase | |||
| 17085 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoSCU108ORF17085P |
| 17090 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoSCU108ORF17085P |
| 17095 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSCU108ORF17085P |
| 17100 | McrC family protein | |||
| 24005 | TrmB family transcriptional regulator | |||
| 24010 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSCU108ORF24010P |
| 24030 | DUF1737 domain-containing protein | |||
| 24390 | TrmB family transcriptional regulator | |||
| 24395 | M | M.SflC32ORFBP (100% identity) | M.EcoSCU108ORF24395P | |
| 24415 | tellurite resistance protein | |||
| plasmid pSCU-108-1 | ||||
| 25060 | 73 aa hypothetical protein | |||
| 25065 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoSCU108ORF25065P |
| 25070 | 103 aa hypothetical protein | |||
| plasmid pSCU-108-2 | ||||
| 25260 | 103 aa hypothetical protein | |||
| 25265 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoSCU108ORF25265P |
| 25270 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7140 | DinI-like family protein | |||
| 7145 | R | EspFAAGmrSDP (100% identity) | EcoSCU108GmrSDP | |
| 7150 | recombinase family protein | |||
| 17095 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17100 | R | EcosS9McrCP (100% identity) | EcoSCU108McrCP | |
| 17105 | R | EcosS3McrBP (100% identity) | EcoSCU108McrBP | |
| 17110 | glycosyltransferase family 2 protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23135 | recombination protein NinB | |||
| 23140 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSCU108ORF23140P |
| 23145 | NinE family protein | |||