Salmonella enterica subsp. enterica serovar Typhimurium YU07-18 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium YU07-18 RM systems
Ref: Vinuesa,P. et al. unpublished
REBASE ref # 30681
| Sequence length: | GenBank #: | |
| Chromosome: | 4,863,742 bp | CP035547 |
| plasmid pYU07-18_89: | 88,898 bp | CP035549 |
REBASE acronym: SenYU0718
Org_num: 41154
All begin D6D39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23615 | endoribonuclease SymE | |||
| 23620 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenYU0718ORF23625P |
| 23625 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenYU0718ORF23625P |
| 23630 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenYU0718ORF23625P |
| 23635 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1810 | Eaa protein | |||
| 1815 | M | M.Ssp15303ORFAP (100% identity) | M.SenYU0718ORF1815P | |
| 1820 | ead/Ea22-like family protein | |||
| 10555 | drug/metabolite exporter YedA | |||
| 10560 | V | V.StyUK1DcmP (100% identity) | V.SenYU0718DcmP | |
| 10565 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenYU0718DcmP |
| 10570 | phosphohydrolase | |||
| 10825 | RusA family crossover junction | |||
| 10830 | M | M.StyUK1V (100% identity) | GATC | M.SenYU0718ORF10830P |
| 10835 | PerC family transcriptional regulator | |||
| 14095 | ribosome-associated translation inhibitor RaiA | |||
| 14100 | M | M.SenYU39ORF1896P (99% identity) | M.SenYU0718ORF14100P | |
| 14105 | Com family DNA-binding transcriptional | |||
| 17830 | DNA-binding transcriptional regulator Fis | |||
| 17835 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenYU0718ORF17835P |
| 17840 | DUF2556 domain-containing protein | |||
| 18325 | ribulose-phosphate 3-epimerase | |||
| 18330 | M | M.StyTDamP (100% identity) | GATC | M.SenYU0718DamP |
| 18335 | cell division protein DamX | |||
| 23465 | ATP-binding protein | |||
| 23470 | RM | StyUK1IV (100% identity) | GATCAG | SenYU0718ORF23470P |
| 23475 | BREX system P-loop protein BrxC | |||
| plasmid pYU07-18_89 | ||||
| 25290 | glutamine--tRNA ligase | |||
| 25295 | M | M.SenYU39ORF5083P (100% identity) | M.SenYU0718ORF25295P | |
| 25300 | 226 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2290 | MFS transporter | |||
| 2295 | M | M.StyUK1I (100% identity) | CAGAG | M.SenYU0718ORF2295P |
| 2300 | R | StyLTI (93% identity) | CAGAG | SenYU0718ORF2295P |
| 2305 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23630 | type I restriction-modification system | |||
| 23635 | R | StyUK1MrrP (97% identity) | SenYU0718MrrP | |
| 23640 | BrnT family toxin | |||