Salmonella enterica subsp. enterica serovar Typhi NCTC8385 |
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Putative Salmonella enterica subsp. enterica serovar Typhi NCTC8385 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,832,830 bp
GenBank #: UFRG00000000 (NZ_UFRG00000000)
REBASE acronym: Sen8385
Org_num: 42346
All begin NCTC8385_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3879 | membrane protein | |||
| 3881 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen8385ORF3882P |
| ??? | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.Sen8385ORF3882P |
| 3884 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen8385ORF3882P |
| 3885 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 28 | metal-dependent phospho hydrolase | |||
| 29 | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen8385DcmP |
| 30 | V | V.StyTDcmP (100% identity) | V.Sen8385DcmP | |
| 31 | inner membrane transporter yedA | |||
| 1086 | 173 aa hypothetical bacteriophage protein | |||
| 1087 | M | M.StyTORF1914P (100% identity) | M.Sen8385ORF1087P | |
| 1088 | 174 aa conserved hypothetical bacteriophage protein | |||
| 1099 | bacteriophage protein | |||
| ??? | M | M.SenCEPR1ORF14095P (100% identity) | M.Sen8385ORF1100P | |
| 1101 | bacteriophage protein | |||
| 2536 | Fis DNA-binding protein | |||
| 2537 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen8385ORF2537P |
| 2538 | protein yhdU | |||
| 2651 | C4-type zinc finger protein, DksA/TraR family | |||
| 2652 | M | M.StyTORF3409P (100% identity) | GATC | M.Sen8385ORF2652P |
| 2653 | possible endonuclease | |||
| 3306 | DamX protein | |||
| 3307 | M | M.StyTDamP (100% identity) | GATC | M.Sen8385DamP |
| 3308 | ribulose-phosphate 3-epimerase | |||
| 3631 | Bacteriophage replication gene A protein (GPA) | |||
| 3632 | M | M.StyTORF4329P (100% identity) | M1.Sen8385ORF3632P | |
| 3633 | exonuclease | |||
| 3852 | Uncharacterised protein | |||
| 3853 | R | Senst12ORF9665P (100% identity) | Sen8385ORF3853P | |
| 3854 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12 | PilV-like protein | |||
| 13 | R | StyTORF872P (100% identity) | CAAACC | Sen8385IIP |
| 14 | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen8385II |
| 15 | SpnT protein | |||
| 1702 | cytoplasmic protein | |||
| ??? | R | StyTORF2507P (100% identity) | CAGAG | Sen8385IP |
| 1705 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen8385I |
| 1706 | metabolite transport protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3884 | type I restriction enzyme EcoKI subunit R | |||
| 3885 | R | StyTMrrP (100% identity) | Sen8385MrrP | |
| 3886 | membrane protein | |||