Salmonella enterica NCTC9941 |
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Putative Salmonella enterica NCTC9941 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,037,769 bp
GenBank #: UGWM00000000 (NZ_UGWM00000000)
REBASE acronym: Sen9941
Org_num: 42304
All begin NCTC9941_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4025 | restriction endonuclease | |||
| 4026 | R | SenSW70ORF19425P (100% identity) | CNGANNNNNNNNTGCG | Sen9941IIIP |
| 4027 | M | M.SenSW70ORF19425P (100% identity) | CNGANNNNNNNNTGCG | M.Sen9941III |
| 4028 | S | S.SenSW70ORF19425P (100% identity) | CNGANNNNNNNNTGCG | S.Sen9941III |
| 4030 | membrane protein | |||
| 4070 | prophage protein | |||
| 4071 | R | SenSW70ORF19650P (99% identity) | TTANNNNNNNTGGG | Sen9941IIP |
| 4072 | M | M.SenSW70ORF19650P (100% identity) | TTANNNNNNNTGGG | M.Sen9941II |
| 4073 | S | S.SenSW70ORF19650P (100% identity) | TTANNNNNNNTGGG | S.Sen9941II |
| 4074 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4889 | Uncharacterised protein | |||
| 4890 | M | M.SphSSU5ORF88P (96% identity) | M.Sen9941ORF4890P | |
| 4891 | Uncharacterised protein | |||
| 358 | DamX protein | |||
| 359 | M | M.SenSW70DamP (100% identity) | GATC | M.Sen9941DamP |
| 360 | ribulose-phosphate 3-epimerase | |||
| 457 | protein yhdU | |||
| 458 | M | M.SenSW70ORF2260P (100% identity) | ATGCAT | M.Sen9941ORF458P |
| 459 | Fis DNA-binding protein | |||
| 1897 | metal-dependent phospho hydrolase | |||
| 1898 | M | M.SenWDcmP (100% identity) | CCWGG | M.Sen9941DcmP |
| 1899 | V | V.StyUK1DcmP (100% identity) | V.Sen9941DcmP | |
| 1900 | inner membrane transporter yedA | |||
| 2716 | lexA DNA binding domain-containing protein | |||
| 2717 | M | M.SenSW70ORF13270P (100% identity) | M.Sen9941ORF2717P | |
| 2718 | DNA methyl transferase | |||
| 2717 | methyltransferase | |||
| 2718 | M | M.SenSW70ORF13275P (100% identity) | M.Sen9941ORF2718P | |
| 2719 | phage protein | |||
| 2979 | Integration, recombination (Phage or Prophage) | |||
| 2980 | M | M.SenM4441ORF12220P (100% identity) | GATC | M.Sen9941ORF2980P |
| 2981 | bacteriophage protein | |||
| 4056 | Uncharacterised protein | |||
| 4057 | R | SenSW70ORF19560P (100% identity) | Sen9941ORF4057P | |
| 4058 | Uncharacterised protein | |||
| 4075 | 5-nucleotidase | |||
| 4076 | R | SenSW70ORF19670P (100% identity) | Sen9941ORF4076P | |
| 4077 | DNA-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3575 | cytoplasmic protein | |||
| 3576 | R | SenWC80ORFAP (99% identity) | CAGAG | Sen9941IP |
| 3577 | M | M.SenSW70ORF17195P (100% identity) | CAGAG | M.Sen9941I |
| 3578 | metabolite transport protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4024 | membrane protein | |||
| 4025 | R | StyTMrrP (100% identity) | Sen9941MrrP | |
| 4026 | type I restriction enzyme EcoKI subunit R | |||