Providencia rettgeri NCTC7476 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Providencia rettgeri NCTC7476 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 4,602,101 bp
GenBank #: UAUG00000000 (NZ_UAUG00000000)
REBASE acronym: Pre7476
Org_num: 41915
All begin NCTC7476_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3513 | HTH-type transcriptional regulator gltC | |||
| 3514 | R | PspV046ORF18845P (100% identity) | GACNNNNNNNCTGG | Pre7476IP |
| 3515 | M | M.Pre2531ORF39020P (99% identity) | GACNNNNNNNCTGG | M.Pre7476I |
| 3516 | S | S.Psp99ORF18900P (72% identity) | GACNNNNNNNCTGG | S.Pre7476I |
| 3517 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3057 | Uncharacterised protein | |||
| 3058 | M | M.Psp75ORF12495P (76% identity) | M.Pre7476ORF3058P | |
| 3059 | Uncharacterised protein | |||
| 3071 | Uncharacterised protein | |||
| 3072 | M | M.PreSW10ORF2360P (92% identity) | M.Pre7476ORF3072P | |
| 3073 | Uncharacterised protein | |||
| 3537 | Site-specific DNA methylase | |||
| ??? | M | M.EasWA002ORF8605P (85% identity) | M.Pre7476ORF3538P | |
| 3540 | Prophage CP4-57 integrase | |||
| 2487 | Protein of uncharacterised function (DUF3780) | |||
| ??? | M | M.Pst33672ORF1707P (100% identity) | M.Pre7476ORF2488P | |
| 2490 | RNA polymerase-associated protein rapA | |||
| 4331 | Phage antitermination protein Q | |||
| 4332 | M | M.Pre235ORF12085P (42% identity) | M.Pre7476ORF4332P | |
| 4333 | Uncharacterised protein | |||
| 4511 | Uncharacterised protein | |||
| 4512 | M | M.Pre12105ORF20790P (100% identity) | M.Pre7476ORF4512P | |
| 4513 | Bacteriophage replication gene A protein (GPA) | |||
| 4514 | Uncharacterised protein | |||
| 4515 | M | M.Pre3ORF20705P (99% identity) | M.Pre7476ORF4515P | |
| 4516 | Domain of Uncharacterised Function with PDB | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3480 | conjugal pilus assembly protein TraF | |||
| 3481 | R | PvuZN3McrCP (100% identity) | Pre7476McrCP | |
| 3482 | R | PvuZN3McrBP (100% identity) | Pre7476McrBP | |
| 3483 | Uncharacterised protein | |||
| 2490 | RNA polymerase-associated protein rapA | |||
| 2491 | R | Pst33672MrrP (100% identity) | Pre7476MrrP | |
| 2492 | Predicted HD-superfamily hydrolase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3372 | Uncharacterized protein conserved in bacteria | |||
| 3373 | M | M.PspV109ORFGP (100% identity) | M.Pre7476ORF3373P | |
| 3374 | Ribulose-phosphate 3-epimerase | |||