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Putative Helicobacter pylori NCTC13094 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,610,054 bp
GenBank #: UGJP00000000 (NZ_UGJP00000000)
REBASE acronym: Hpy13094
Org_num: 43569
All begin NCTC13094_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
221 | Uncharacterized protein conserved in bacteria | |||
??? | R | HpyCOL210VIIIP (93% identity) | CCANNNNNNTC | Hpy13094ORF224P |
224 | M | M.HpySP310ORF2320P (96% identity) | CCANNNNNNTC | M.Hpy13094ORF224P |
225 | S | S.HpySP12ORF2370P (96% identity) | CCANNNNNNTC | S.Hpy13094ORF224P |
227 | polyphosphate kinase | |||
1102 | phosphatidic acid phosphatase | |||
??? | M | M.HpyCOL210ORF4275P (96% identity) | M.Hpy13094ORF1103P | |
1105 | S | S.HpyCOL210ORF4275P (99% identity) | S.Hpy13094ORF1103P | |
1106 | Type I restriction-modification system subunit | |||
742 | metal-dependent hydrolase | |||
743 | R | HpyISR5ORF7355P (94% identity) | CRTANNNNNNRTTA | Hpy13094XVP |
744 | M | M.HpyPE130ORF7425P (97% identity) | CRTANNNNNNRTTA | M.Hpy13094XV |
745 | S | S.HpyPE140VII (96% identity) | CRTANNNNNNRTTA | S.Hpy13094XV |
746 | thymidylate synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
7 | Uncharacterised protein | |||
8 | RM | HpySP103ORF3485P (90% identity) | Hpy13094ORF8P | |
9 | anaerobic glycerol-3-phosphate | |||
774 | outer membrane protein (omp32) | |||
775 | R | HpySP206IIIP (97% identity) | CCATC | Hpy13094IVP |
776 | M | M2.HpyT003IV (100% identity) | CCATC | M1.Hpy13094IV |
??? | M | M2.HpyME32VI (78% identity) | CCATC | M2.Hpy13094IV |
778 | Permease | |||
806 | HP1473-transformation associated protein | |||
807 | RM | HpyIS2ORF6885P (98% identity) | Hpy13094ORF807P | |
808 | S | S.Hpy030ORF7080P (67% identity) | S.Hpy13094ORF807P | |
809 | DNA polymerase I | |||
1183 | heavy-metal cation-transporting P-type | |||
1184 | M | M.HpyF010ORF2540P (99% identity) | M.Hpy13094ORF1184P | |
1185 | Uncharacterised protein | |||
1184 | site-specific DNA methylase | |||
1185 | R | HpyU001ORF2750P (100% identity) | Hpy13094ORF1185P | |
1186 | outer membrane protein | |||
1383 | type III R-M system methyltransferase | |||
1384 | M | M2.HpyLI01II (98% identity) | GAAGA | M1.Hpy13094VIII |
??? | M | M2.HpyU303VI (96% identity) | GAAGA | M2.Hpy13094VIII |
??? | R | HpySWT05ORF6645P (63% identity) | GAAGA | Hpy13094VIIIP |
1386 | two-component regulator | |||
864 | negative regulator of flagellin synthesis FlgM | |||
??? | M | M.HpyCOL210XVII (95% identity) | GCGC | M.Hpy13094ORF865P |
866 | Uncharacterised protein | |||
1396 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | HpyI018ORF6720P (92% identity) | Hpy13094ORF1397P | |
1399 | adenine specific DNA methyltransferase | |||
1398 | adenine specific DNA methyltransferase | |||
1399 | M | M.Hpy5024ORF790P (99% identity) | GANTC | M.Hpy13094IX |
1400 | R | HpyJ001VIIIP (97% identity) | GANTC | Hpy13094IXP |
1401 | carboxyl-terminal protease | |||
903 | Laminin subunit alpha-2 precursor | |||
904 | R | HpySP204VIIIP (98% identity) | TCNNGA | Hpy13094ORF905P |
??? | M | M.HpyCOL119XI (98% identity) | TCNNGA | M.Hpy13094ORF905P |
907 | biotin carboxylase | |||
1280 | acetone carboxylase subunit gamma | |||
1281 | R | HpyU409VIP (99% identity) | CCNNGG | Hpy13094VP |
1282 | M | M.HpyU422VI (99% identity) | CCNNGG | M.Hpy13094V |
1283 | polysaccharide biosynthesis protein | |||
180 | metalloendopeptidase like protein | |||
??? | R | HpyNCI22XP (96% identity) | GTAC | Hpy13094XIP |
??? | M | M.HpyGCT27ORF1545P (96% identity) | GTAC | M.Hpy13094XI |
184 | DNA polymerase III subunit beta | |||
199 | Catalase like protein | |||
??? | R | HpySP804ORF2530P (72% identity) | ACGT | Hpy13094ORF201P |
201 | M | M.HpyPE102ORF2295P (99% identity) | ACGT | M.Hpy13094ORF201P |
202 | type II restriction endonuclease | |||
201 | type II DNA modification enzyme | |||
202 | R | HpyT005IIP (99% identity) | ACNGT | Hpy13094IIP |
??? | M | M.HpyV002II (99% identity) | ACNGT | M.Hpy13094II |
204 | GTP-binding protein | |||
206 | Uncharacterised protein | |||
207 | M | M.HpyCOL210III (98% identity) | ATTAAT | M.Hpy13094III |
208 | outer membrane protein | |||
1547 | IceA2 protein | |||
??? | M | M.HpyME32I (98% identity) | CATG | M.Hpy13094I |
1549 | haloacid dehalogenase/epoxide hydrolase | |||
1044 | ATP-dependent DNA helicase | |||
1045 | M | M.HpyC011III (97% identity) | GTNNAC | M.Hpy13094XII |
1046 | R | HpySP103XP (99% identity) | GTNNAC | Hpy13094XIIP |
1047 | flagellar hook protein FlgE | |||
398 | ATP-dependent Clp protease, ATP-binding subunit | |||
??? | M | M.HpyL008II (98% identity) | CCGG | M.Hpy13094ORF399P |
??? | R | HpyGM8IVP (95% identity) | CCGG | Hpy13094ORF399P |
402 | Uncharacterised protein | |||
402 | Uncharacterised protein | |||
403 | M | M.HpyBR2XI (97% identity) | TCGA | M.Hpy13094XIII |
404 | exodeoxyribonuclease VII large subunit | |||
482 | pseudaminic acid synthase | |||
??? | R | R2.HpyCOL210ORF855P (97% identity) | R1.Hpy13094ORF488P | |
??? | R | R1.HpyPE109ORF855P (100% identity) | R2.Hpy13094ORF488P | |
487 | Uncharacterised protein | |||
569 | alpha-1,2-fucosyltransferase | |||
570 | M | M.HpyC122III (99% identity) | GATC | M.Hpy13094X |
??? | R | HpySP404IXP (98% identity) | GATC | Hpy13094XP |
574 | malonyl CoA-acyl carrier protein transacylase | |||
613 | SSS family proline:sodium (Na+) symporter | |||
614 | M | M.HpyCOL210VII (99% identity) | CCTTC | M.Hpy13094VII |
615 | R | HpySP807VP (98% identity) | CCTTC | Hpy13094VIIP |
616 | type II DNA modification enzyme | |||
615 | type II R-M system restriction endonuclease | |||
616 | M | M2.HpyCOL113VP (100% identity) | CCTC | M2.Hpy13094VIP |
617 | M | M1.HpyI014XVI (98% identity) | CCTC | M1.Hpy13094VI |
618 | Agmatine deiminase | |||
721 | elongation factor Ts | |||
722 | R | HpyI019VIIIP (99% identity) | TGCA | Hpy13094XIVP |
723 | M | M.HpyNCI25II (99% identity) | TGCA | M.Hpy13094XIV |
724 | Uncharacterised protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1123 | relaxase | |||
1124 | M | M.HpyNCI25ORFOP (10% identity) | M.Hpy13094ORF1124P | |
1125 | Uncharacterised protein | |||
1368 | biotin synthase | |||
??? | R | HpyH006ORF6735P (88% identity) | Hpy13094ORF1371P | |
1371 | M | M.HpyBR4ORF6580P (95% identity) | M.Hpy13094ORF1371P | |
1372 | endonuclease | |||
1381 | rod shape-determining MreC family protein | |||
1382 | R | HpyLI03XVIP (91% identity) | Hpy13094ORF1383P | |
1383 | M | M.HpyGRE043ORF6645P (94% identity) | M.Hpy13094ORF1383P | |
1384 | modification methylase mjai | |||
756 | ATP-dependent DNA helicase | |||
757 | M | M.HpyH028ORF7460P (95% identity) | M.Hpy13094ORF757P | |
758 | R | HpyNCI40ORFA1P (95% identity) | Hpy13094ORF757P |