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Putative Helicobacter canis NCTC12410 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,237,085 bp
GenBank #: UGHV00000000 (NZ_UGHV00000000)
REBASE acronym: Hca12410
Org_num: 43559
All begin NCTC12410_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
127 | malonyl CoA-acyl carrier protein transacylase | |||
128 | R | HmaHm17ORF9530P (52% identity) | Hca12410ORF129P | |
129 | M | M.HmaHm17ORF9530P (70% identity) | M.Hca12410ORF129P | |
130 | S | S.HmaHm17ORF7295P (46% identity) | S.Hca12410ORF129P | |
131 | cysteine synthase | |||
238 | type I restriction-modification system, M | |||
??? | M | M.Cup12264ORF75P (78% identity) | M.Hca12410ORF239P | |
240 | R | Cup3940ORF1574P (91% identity) | Hca12410ORF239P | |
241 | Uncharacterised protein | |||
242 | Uncharacterised protein | |||
243 | Toxin RelE | |||
244 | S | S.Cup14913ORF1616P (62% identity) | S.Hca12410ORF239P | |
245 | Uncharacterised protein | |||
946 | Uncharacterized protein conserved in bacteria | |||
947 | S | S.Cup3940ORF297P (56% identity) | S.Hca12410ORF950P | |
948 | Uncharacterised protein | |||
949 | Uncharacterised protein | |||
950 | M | M.Cup3940ORF297P (97% identity) | M.Hca12410ORF950P | |
951 | R | Cup3940ORF297P (97% identity) | Hca12410ORF950P | |
952 | glycyl-tRNA synthetase subunit alpha | |||
1763 | Uncharacterized protein conserved in bacteria, | |||
1764 | M | M.HbiMUORF255P (92% identity) | M.Hca12410ORF1764P | |
1765 | Fic family protein | |||
1766 | S | S.Asp3624ORF3130P (18% identity) | S.Hca12410ORF1764P | |
1767 | dihydroxy-acid dehydratase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
131 | cysteine synthase | |||
132 | RM | Cin12927SORF1529P (47% identity) | Hca12410ORF132P | |
133 | NADP-dependent alcohol dehydrogenase | |||
279 | Inner membrane transport protein YeaN | |||
280 | R | HciP01DORFXP (95% identity) | Hca12410ORF281P | |
281 | M | M.HciP01DORFXP (61% identity) | M.Hca12410ORF281P | |
282 | Uncharacterised protein | |||
361 | alkanesulfonate monooxygenase | |||
362 | M | M.HmuST1ORF4235P (57% identity) | M.Hca12410ORF362P | |
363 | AlwI restriction endonuclease family protein | |||
362 | type II methylase | |||
363 | R | HhiYS1ORFQP (53% identity) | Hca12410ORF364P | |
364 | M | M1.Htr114ORF8200P (50% identity) | M.Hca12410ORF364P | |
365 | shikimate kinase | |||
426 | Uncharacterised protein | |||
427 | RM | Hci12221ORF380P (74% identity) | Hca12410ORF427P | |
428 | GtrA family protein | |||
507 | flagellar assembly protein FliW | |||
508 | R | Cup6824ORF5895P (84% identity) | Hca12410ORF509P | |
509 | M | M.Cup6824ORF5895P (92% identity) | M.Hca12410ORF509P | |
510 | oxidoreductase | |||
746 | Uncharacterised protein | |||
747 | R | Hwi435ORF6305P (100% identity) | Hca12410ORF748P | |
748 | M | M.Hwi435ORF6305P (100% identity) | M.Hca12410ORF748P | |
749 | Uncharacterised protein | |||
765 | adenylosuccinate lyase | |||
766 | M | M2.Cup197059ORF1148P (96% identity) | M.Hca12410ORF766P | |
??? | R | Hwi488ORF685P (93% identity) | Hca12410ORF766P | |
769 | Uncharacterised protein | |||
1013 | M | M.Hbi43879ORF1243P (92% identity) | CCGG | M.Hca12410II |
1014 | HNH endonuclease domain-containing protein | |||
1060 | Uncharacterised protein | |||
1061 | M | M.Hbi43879ORF664P (92% identity) | GTNNAC | M.Hca12410III |
??? | R | Hbi43879ORF664P (66% identity) | GTNNAC | Hca12410IIIP |
1064 | GMP synthase | |||
1378 | Uncharacterised protein | |||
1379 | RM | HbiMUORF7335P (75% identity) | Hca12410ORF1379P | |
1380 | phosphoribosylformylglycinamidine synthase | |||
1415 | Uncharacterised protein | |||
1416 | RM | Hca1463ORFQP (46% identity) | Hca12410ORF1416P | |
1417 | Uncharacterised protein | |||
1430 | Uncharacterised protein | |||
1431 | M | M.SspP129ORF1047P (32% identity) | M.Hca12410ORF1431P | |
1500 | 30S ribosomal protein S15 | |||
1501 | M | M1.Hwi435ORF1540P (94% identity) | CCTC | M1.Hca12410I |
1502 | M | M2.Hwi435ORF1540P (96% identity) | CCTC | M2.Hca12410IP |
1503 | R | Hwi7711ORF1530P (88% identity) | CCTC | Hca12410IP |
1504 | alpha-1,3-fucosyltransferase | |||
1507 | excinuclease ABC subunit C | |||
??? | RM | Hci94105ORF885P (64% identity) | Hca12410ORF1508P | |
1509 | arginyl-tRNA-protein transferase | |||
1723 | D-lactate dehydrogenase | |||
1724 | RM | Hca1463ORFMP (55% identity) | Hca12410ORF1724AP | |
1725 | nuclease | |||
1726 | RM | Hwi7711ORF265P (16% identity) | Hca12410ORF1724BP | |
1727 | Uncharacterised protein | |||
1794 | Uncharacterized conserved protein | |||
??? | M | M.Cup6824ORF3270P (84% identity) | M.Hca12410ORF1795P | |
1797 | glutamine ABC transporter permease protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
698 | saccharopine dehydrogenase | |||
699 | M | M.Hbi43879ORF1879P (70% identity) | M.Hca12410ORF699P | |
700 | ATPase | |||
701 | DNA binding protein | |||
702 | R | HbiMUORF4545P (92% identity) | Hca12410ORF699P | |
703 | type III restriction enzyme R protein | |||
702 | type III restriction enzyme R protein | |||
703 | R | Cup6824ORF2315P (96% identity) | Hca12410ORF704P | |
??? | M | M.Cup14ORFAP (99% identity) | M.Hca12410ORF704P | |
706 | SMR family multidrug efflux pump | |||
1546 | glycosyltransferase | |||
1547 | M | M.HciT36ORF1398P (71% identity) | M.Hca12410ORF1547P | |
1548 | Uncharacterised protein | |||
1549 | R | Hca1463ORFBP (90% identity) | Hca12410ORF1547P | |
1550 | SAM-dependent methyltransferase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1518 | tRNA (uracil-5)-methyltransferase | |||
1519 | R | HciT36McrCP (57% identity) | Hca12410McrCP | |
1520 | R | Hci12219McrBP (37% identity) | Hca12410McrBP | |
1521 | transaldolase |