Escherichia coli NCTC9030 |
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Putative Escherichia coli NCTC9030 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,485,628 bp
GenBank #: UGBQ00000000 (NZ_UGBQ00000000)
REBASE acronym: Eco9030
Org_num: 43801
All begin NCTC9030_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4698 | restriction endonuclease | |||
| 4699 | M | M.Esp9308ORFIP (100% identity) | CGTANNNNNGTC | M.Eco9030I |
| 4700 | S | S.EcoSH3ORF25175P (100% identity) | CGTANNNNNGTC | S.Eco9030I |
| 4701 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco9030IP |
| 4703 | Uncharacterized conserved protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 92 | cytoplasmic protein | |||
| ??? | M | M.Kpn10553ORF29655P (98% identity) | M.Eco9030ORF93P | |
| 94 | YfdA | |||
| 544 | DamX protein | |||
| ??? | M | M.UbaC1152DamP (99% identity) | GATC | M.Eco9030DamP |
| 546 | ribulose-phosphate 3-epimerase | |||
| 672 | membrane protein | |||
| 673 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco9030ORF673P |
| 674 | DNA-binding protein Fis | |||
| 1942 | CPS-53 (KpLE1) prophage protein | |||
| 1943 | M | M.Eco11127ORF1923P (100% identity) | GATC | M.Eco9030ORF1943P |
| 1944 | LexA repressor | |||
| 1948 | antitermination protein from phage origin | |||
| 1949 | M | M.Eco11127ORF1917P (100% identity) | M.Eco9030ORF1949P | |
| 1950 | hemin importer ATP-binding subunit | |||
| 2221 | phosphohydrolase | |||
| 2222 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.Eco9030DcmP |
| 2223 | V | V.SflFF64DcmP (100% identity) | V.Eco9030DcmP | |
| 2224 | DMT superfamily transporter inner | |||
| 2335 | replication protein from phage | |||
| 2336 | M | M.EcoSTEC032ORF3885P (100% identity) | GATC | M.Eco9030ORF2336P |
| 2337 | Crossover junction | |||
| 2790 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco9030ORF2791P | |
| 2792 | membrane protein | |||
| 3229 | TolA protein (fragment) of prophage | |||
| 3232 | M | M.EcoSTEC032ORF10825P (100% identity) | M.Eco9030ORF3232P | |
| 3233 | lipoprotein | |||
| 3760 | Uncharacterised protein | |||
| 3761 | M | M.EfeC18ORF7705P (100% identity) | M.Eco9030ORF3761P | |
| 3762 | TraR/DksA family transcriptional regulator | |||
| 4656 | LexA repressor | |||
| 4657 | M | M.SflFF35ORF16050P (100% identity) | GATC | M.Eco9030ORF4657P |
| 4658 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4701 | type I restriction-modification system | |||
| 4703 | R | Eco11127GmrSDP (100% identity) | Eco9030GmrDP | |
| 4704 | protein YjiS | |||
| 4976 | transposase, IS110 family protein | |||
| 4977 | R | EcoG8McrCP (100% identity) | Eco9030McrCP | |
| 4978 | R | Kpn0718McrBP (100% identity) | Eco9030McrBP | |
| 4979 | insertion sequence ATP-binding protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3620 | Uncharacterised protein | |||
| 3621 | M | M.Eco11127ORF255P (100% identity) | M.Eco9030ORF3621P | |
| 3622 | Uncharacterised protein | |||
| 4859 | Uncharacterised protein | |||
| 4860 | M | M.EcoS792ORF20065P (100% identity) | M.Eco9030ORF4860P | |
| 4861 | Uncharacterised protein | |||