Escherichia coli NCTC8959 |
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Putative Escherichia coli NCTC8959 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,385,766 bp
GenBank #: UFZD00000000 (NZ_UFZD00000000)
REBASE acronym: Eco8959
Org_num: 43776
All begin NCTC8959_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 729 | hydrolase | |||
| 730 | R | EcoO127I (100% identity) | YTCANNNNNNGTNG | Eco8959IIP |
| 731 | RNase III inhibitor | |||
| 732 | Uncharacterised protein | |||
| 733 | S | S.EcoE234869ORFIP (100% identity) | YTCANNNNNNGTNG | S.Eco8959II |
| 734 | M | M.EcoO127I (100% identity) | YTCANNNNNNGTNG | M.Eco8959II |
| 735 | ybl103 | |||
| 4330 | Uncharacterised protein | |||
| 4331 | S | S.EcoECB1ORF9045P (100% identity) | TGANNNNNNCTTT | S.Eco8959I |
| 4332 | M | M.EcoDEC2DORF4922P (100% identity) | TGANNNNNNCTTT | M.Eco8959I |
| 4333 | R | EcoECB1ORF9045P (100% identity) | TGANNNNNNCTTT | Eco8959IP |
| 4334 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 189 | YfdA | |||
| 190 | M | M.EcoEC107ORF26165P (100% identity) | M.Eco8959ORF190P | |
| 191 | cytoplasmic protein | |||
| 92 | recombination associated protein | |||
| 93 | M | M.EcoDEC1CORF2007P (100% identity) | M.Eco8959ORF93P | |
| 96 | Uncharacterised protein | |||
| 423 | TraR/DksA family transcriptional regulator | |||
| 424 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.Eco8959ORF424P |
| 425 | replication protein for prophage | |||
| 616 | protein NinB | |||
| 617 | M | M.EcoSC477ORFCP (100% identity) | GATC | M.Eco8959ORF617P |
| 618 | DNA-binding protein from phage origin | |||
| 885 | lipoprotein | |||
| 886 | M | M.EcoS7438ORFNP (100% identity) | M.Eco8959ORF886P | |
| 890 | anti-adapter protein IraM | |||
| 1805 | DMT superfamily transporter inner | |||
| 1806 | V | V.EcoDEC2EDcmP (100% identity) | V.Eco8959DcmP | |
| 1807 | M | M.EcoSC477DcmP (100% identity) | CCWGG | M.Eco8959DcmP |
| 1808 | phosphohydrolase | |||
| 3219 | DNA-binding protein Fis | |||
| 3220 | M | M.EcoS6995ORFBP (100% identity) | ATGCAT | M.Eco8959ORF3220P |
| 3221 | membrane protein | |||
| 3326 | ribulose-phosphate 3-epimerase | |||
| 3327 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco8959DamP |
| 3328 | DamX protein | |||
| 4523 | LexA repressor | |||
| 4524 | M | M.EcoDEC1CORF3567P (100% identity) | M.Eco8959ORF4524P | |
| 4525 | insertion sequence IS100, ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4568 | helicase | |||
| 4569 | M | M.EcoR71ORF22205P (100% identity) | GWCCC | M.Eco8959III |
| 4570 | R | EcoSCU172ORF3240P (100% identity) | GWCCC | Eco8959IIIP |
| 4571 | Uncharacterised protein | |||