Escherichia coli NCTC8622 |
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Putative Escherichia coli NCTC8622 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
GenBank #: UGCP00000000
REBASE acronym: Eco8622
Org_num: 43773
All begin NCTC8622_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2278 | Aec78 | |||
| ??? | R | EcoS7005ORFFP (100% identity) | CCANNNNNNNTGAA | Eco8622IP |
| 2283 | S | S.EcoS7380ORFEP (100% identity) | CCANNNNNNNTGAA | S.Eco8622I |
| 2284 | M | M.SflN110ORF19045P (100% identity) | CCANNNNNNNTGAA | M.Eco8622I |
| 2285 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7960 | TciA/TerB-like protein | |||
| ??? | M | M.EcoZYB62ORF24960P (99% identity) | M.Eco8622ORF7964P | |
| 7965 | recombination associated protein | |||
| 104 | YfdA | |||
| 105 | M | M.Ecos671ORFIP (100% identity) | M.Eco8622ORF105P | |
| 106 | cytoplasmic protein | |||
| 448 | DNA-binding protein Fis | |||
| ??? | M | M.Sen1328ORF10360P (73% identity) | ATGCAT | M.Eco8622ORF449P |
| 452 | membrane protein | |||
| 603 | ribulose-phosphate 3-epimerase | |||
| ??? | M | M.EcoBone7DamP (93% identity) | M.Eco8622DamP | |
| 605 | DamX protein | |||
| 1755 | phage O protein family | |||
| 1756 | M | M.EcoGRORF22720P (64% identity) | M.Eco8622ORF1756P | |
| 1757 | Crossover junction | |||
| 2289 | McrC family protein, McrBC 5-methylcytosine | |||
| 2290 | R | SflSTLE4ORF19250P (100% identity) | Eco8622ORF2290P | |
| 2291 | YjhS protein | |||
| 3230 | CPS-53 (KpLE1) prophage protein | |||
| 3231 | M | M.EcoSO40ORF27175P (100% identity) | GATC | M.Eco8622ORF3231P |
| 3232 | LexA repressor | |||
| 4233 | Uncharacterised protein | |||
| ??? | M | M.EcoSO40ORF23900P (94% identity) | M.Eco8622ORF4234P | |
| 4235 | Uncharacterised protein | |||
| 4469 | lipoprotein | |||
| 4470 | M | M.EcoS7005ORFLP (57% identity) | M.Eco8622ORF4470P | |
| 4471 | DNA methylase | |||
| 4613 | phosphohydrolase | |||
| ??? | M | M.Eco8179DcmP (99% identity) | CCWGG | M.Eco8622DcmP |
| 4617 | V | V.SflFF59DcmP (100% identity) | V.Eco8622DcmP | |
| 4618 | DMT superfamily transporter inner | |||
| 6125 | phage protein | |||
| 6130 | M | M.EcoDEC12EORF951P (98% identity) | M.Eco8622ORF6130P | |
| 6131 | lipoprotein | |||
| 6550 | NinE protein | |||
| 6551 | M | M.EcoS7380ORFIP (94% identity) | GATC | M.Eco8622ORF6551P |
| 6552 | recombination protein ninB from phage origin | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2287 | Uncharacterised protein | |||
| 2288 | R | Eco8179McrBP (100% identity) | Eco8622McrBP | |
| 2289 | R | SflSTLE4McrCP (100% identity) | Eco8622McrCP | |
| 2290 | restriction endonuclease | |||