Escherichia coli NCTC7922 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC7922 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,398,246 bp
GenBank #: UGFC00000000 (NZ_UGFC00000000)
REBASE acronym: Eco7922
Org_num: 43756
All begin NCTC7922_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5468 | transposase | |||
| 5471 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco7922IP |
| 5472 | S | S.EcoSH3ORF25175P (100% identity) | CGTANNNNNGTC | S.Eco7922I |
| 5473 | M | M.Esp9308ORFIP (100% identity) | CGTANNNNNGTC | M.Eco7922I |
| 5474 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 157 | cytoplasmic protein | |||
| ??? | M | M.EcoC9777ORF4731P (99% identity) | M.Eco7922ORF158P | |
| 159 | YfdA | |||
| 357 | metal-binding hydrolase | |||
| 359 | M | M.EcoSO173ORF23940P (100% identity) | M.Eco7922ORF359P | |
| 360 | Uncharacterised protein | |||
| 250 | cytoplasmic protein | |||
| ??? | M | M.EcoC9777ORF4731P (98% identity) | M.Eco7922ORF251P | |
| 253 | YfdA | |||
| 1737 | phosphohydrolase | |||
| ??? | M | M.EcoC9098DcmP (96% identity) | CCWGG | M.Eco7922DcmP |
| 1741 | V | V.SsoSE61DcmP (100% identity) | V.Eco7922DcmP | |
| 1742 | DMT superfamily transporter inner | |||
| 719 | lipoprotein | |||
| ??? | M | M.EcoC9777ORF2975P (100% identity) | M.Eco7922ORF720P | |
| 726 | YjhS | |||
| 1495 | prophage protein ninB | |||
| 1496 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco7922ORF1496P |
| 1499 | Ant antirepressor protein from prophage | |||
| 2664 | TolA protein (fragment) of prophage | |||
| 2667 | M | M.EcoSCU103ORF10815P (100% identity) | M.Eco7922ORF2667P | |
| 2668 | lipoprotein | |||
| 2672 | Uncharacterised protein | |||
| ??? | R | EcoS50ORF18835P (73% identity) | Eco7922ORFAP | |
| 2674 | outer membrane usher protein FimD | |||
| ??? | M | M.EcoB1109aORFBP (93% identity) | M.Eco7922ORFAP | |
| 2676 | prophage protein | |||
| 2949 | phage portal protein | |||
| 2951 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco7922ORF2951P |
| 2952 | prophage protein ninB | |||
| 3997 | DNA-binding protein Fis | |||
| 3998 | M | M.EcoVCSW7ORF2325P (100% identity) | ATGCAT | M.Eco7922ORF3998P |
| 3999 | membrane protein | |||
| 4141 | ribulose-phosphate 3-epimerase | |||
| 4142 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco7922DamP |
| 4143 | DamX protein | |||
| 5413 | Prophage integrase | |||
| 5414 | M | M.EcoC9777II (100% identity) | CYCGRG | M.Eco7922II |
| ??? | R | Kpn173ORF23655P (42% identity) | CYCGRG | Eco7922IIP |
| 5415 | Uncharacterised protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3619 | Uncharacterised protein | |||
| ??? | M | M.Eco7927ORF992P (98% identity) | M.Eco7922ORF3620P | |
| ??? | R | Eco7927ORF992P (99% identity) | Eco7922ORF3620P | |
| 3626 | IS21 family transposition helper protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5465 | protein YjiS | |||
| ??? | R | EcoC9777GmrDP (99% identity) | Eco7922GmrDP | |
| 5468 | transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 285 | Uncharacterised protein | |||
| 286 | M | M.EcoSCU172ORF16035P (70% identity) | M.Eco7922ORF286P | |
| 287 | ribonuclease (polynucleotidyl | |||
| 1858 | Uncharacterised protein | |||
| 1859 | M | M.EcoC9777ORF3961P (95% identity) | M.Eco7922ORF1859P | |
| 1860 | Uncharacterised protein | |||