Escherichia coli NCTC11127 |
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Putative Escherichia coli NCTC11127 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,483,562 bp
GenBank #: UGBP00000000 (NZ_UGBP00000000)
REBASE acronym: Eco11127
Org_num: 43710
All begin NCTC11127_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4559 | Uncharacterized conserved protein | |||
| 4561 | R | EcoR31ORF16485P (100% identity) | CGTANNNNNGTC | Eco11127IP |
| 4562 | S | S.EcoSH3ORF25175P (100% identity) | CGTANNNNNGTC | S.Eco11127I |
| 4563 | M | M.Esp9308ORFIP (100% identity) | CGTANNNNNGTC | M.Eco11127I |
| 4564 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 102 | YfdA | |||
| 103 | M | M.SspPIBORF23080P (100% identity) | M.Eco11127ORF103P | |
| 104 | cytoplasmic protein | |||
| 643 | lipoprotein | |||
| 644 | M | M.EcoSTEC032ORF10825P (100% identity) | M.Eco11127ORF644P | |
| 647 | TolA protein (fragment) of prophage | |||
| 1530 | Crossover junction | |||
| 1531 | M | M.EcoSTEC032ORF3885P (100% identity) | GATC | M.Eco11127ORF1531P |
| 1532 | replication protein from phage | |||
| 1644 | DMT superfamily transporter inner | |||
| 1645 | V | V.SflFF64DcmP (100% identity) | V.Eco11127DcmP | |
| 1646 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.Eco11127DcmP |
| 1647 | phosphohydrolase | |||
| 1916 | hemin importer ATP-binding subunit | |||
| 1917 | M | M.Eco9030ORF1949P (100% identity) | M.Eco11127ORF1917P | |
| 1918 | antitermination protein from phage origin | |||
| 1922 | LexA repressor | |||
| 1923 | M | M.Eco9030ORF1943P (100% identity) | GATC | M.Eco11127ORF1923P |
| 1924 | CPS-53 (KpLE1) prophage protein | |||
| 3180 | DNA-binding protein Fis | |||
| 3181 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco11127ORF3181P |
| 3182 | membrane protein | |||
| 3309 | ribulose-phosphate 3-epimerase | |||
| 3310 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco11127DamP |
| 3311 | DamX protein | |||
| 4604 | CPS-53 (KpLE1) prophage protein | |||
| 4605 | M | M.SflFF35ORF16050P (100% identity) | GATC | M.Eco11127ORF4605P |
| 4606 | LexA repressor | |||
| 5491 | TraR/DksA family transcriptional regulator | |||
| 5492 | M | M.EfeC18ORF7705P (100% identity) | M.Eco11127ORF5492P | |
| 5493 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4284 | insertion sequence ATP-binding protein | |||
| 4285 | R | Kpn0718McrBP (100% identity) | Eco11127McrBP | |
| 4286 | R | EcoG8McrCP (100% identity) | Eco11127McrCP | |
| 4287 | transposase, IS110 family protein | |||
| 4558 | protein YjiS | |||
| 4559 | R | Eco9030GmrDP (100% identity) | Eco11127GmrSDP | |
| 4561 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 254 | Uncharacterised protein | |||
| 255 | M | M.Eco9030ORF3621P (100% identity) | M.Eco11127ORF255P | |
| 256 | Uncharacterised protein | |||
| 4402 | Uncharacterised protein | |||
| 4403 | M | M.EcoS792ORF20065P (100% identity) | M.Eco11127ORF4403P | |
| 4404 | Uncharacterised protein | |||