Escherichia coli NCTC11107 |
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Putative Escherichia coli NCTC11107 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,080,432 bp
GenBank #: UGAS00000000 (NZ_UGAS00000000)
REBASE acronym: Eco11107
Org_num: 43694
All begin NCTC11107_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 657 | methylated adenine and cytosine restriction | |||
| 658 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco11107IIP |
| 659 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco11107II |
| ??? | S | S.EcoU90ORF3805P (100% identity) | TGANNNNNNNNTGCT | S.Eco11107II |
| 662 | 5-methylcytosine-specific restriction enzyme | |||
| 3353 | Uncharacterised protein | |||
| 3354 | M | M.EcoSTEC346ORFGP (100% identity) | AGCANNNNNNNTAG | M.Eco11107I |
| 3355 | S | S.EcoTX1999ORF2159P (100% identity) | AGCANNNNNNNTAG | S.Eco11107I |
| 3356 | R | EcoTX1999ORF2159P (100% identity) | AGCANNNNNNNTAG | Eco11107IP |
| 3357 | hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4938 | cytoplasmic protein | |||
| 4939 | M | M.SflN92ORF24820P (100% identity) | M.Eco11107ORF4939P | |
| 4940 | YfdA | |||
| 1728 | DamX protein | |||
| 1729 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco11107Dam |
| 1730 | ribulose-phosphate 3-epimerase | |||
| 1856 | membrane protein | |||
| 1857 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco11107ORF1857P |
| 1858 | DNA-binding protein Fis | |||
| 2618 | Uncharacterised protein | |||
| ??? | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco11107ORF2619P | |
| 2620 | R | EcoYPE3ORF18250P (100% identity) | Eco11107ORF2619P | |
| 2621 | 121 aa hypothetical protein | |||
| 3291 | phosphohydrolase | |||
| 3292 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco11107DcmP |
| 3293 | V | V.SflSTLE3DcmP (100% identity) | V.Eco11107DcmP | |
| 3294 | DMT superfamily transporter inner | |||
| 3716 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco11107ORF3717P | |
| 3718 | membrane protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 656 | GTP-binding protein YjiA | |||
| 657 | R | Ssp28760MrrP (100% identity) | Eco11107Mrr2P | |
| 658 | type I restriction enzyme EcoKI subunit R | |||
| 660 | specificity determinant for hsdM and hsdR | |||
| ??? | R | Ssp28760McrBP (100% identity) | Eco11107McrBP | |
| 663 | R | Ssp28760McrCP (100% identity) | Eco11107McrCP | |