Clostridium cochlearium NCTC2909 |
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Putative Clostridium cochlearium NCTC2909 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 2,525,868 bp
GenBank #: UFWH00000000 (NZ_UFWH00000000)
REBASE acronym: Cco2909
Org_num: 42964
All begin NCTC2909_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 921 | phosphate regulon sensor protein phoR | |||
| 922 | R | Cco13027IIP (100% identity) | Cco2909ORF924P | |
| 923 | S | S.Cco13027II (100% identity) | S.Cco2909ORF924P | |
| 924 | M | M.Cco13027II (100% identity) | M.Cco2909ORF924P | |
| 925 | C | C.Cco13027IIP (100% identity) | C.Cco2909ORF924P | |
| 926 | phage/plasmid primase, P4 family, C-terminal | |||
| 951 | transposase | |||
| 952 | S | S.Cco13027ORF934P (100% identity) | S.Cco2909ORF954P | |
| 953 | gp2 | |||
| 954 | virulence protein | |||
| 955 | R | Cco13027ORF934P (100% identity) | Cco2909ORF954P | |
| 956 | Uncharacterised protein | |||
| 2148 | chromosome segregation protein | |||
| 2149 | S | S.Cco13027I (100% identity) | RTAYNNNNNCTTA | S.Cco2909I |
| 2150 | M | M.Cco13027I (100% identity) | RTAYNNNNNCTTA | M.Cco2909I |
| 2151 | R | Cco13027IP (66% identity) | RTAYNNNNNCTTA | Cco2909IP |
| 2152 | recombinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 340 | Uncharacterised protein | |||
| 341 | M | M.Cco13027ORF331P (100% identity) | M.Cco2909ORF341P | |
| 342 | Uncharacterised protein | |||
| 1287 | CAAX amino terminal protease family protein | |||
| 1288 | R | Cco13027ORF1261P (100% identity) | Cco2909ORF1289P | |
| 1289 | M | M1.Cco13027ORF1261P (100% identity) | M1.Cco2909ORF1289P | |
| ??? | M | M2.Cco13027ORF1261P (100% identity) | M2.Cco2909ORF1289P | |
| 1292 | Uncharacterised protein | |||
| 1724 | transposase | |||
| 1725 | M | M.Cco13027ORF1687P (100% identity) | M.Cco2909ORF1725P | |
| 1726 | R | Cco13027ORF1687P (100% identity) | Cco2909ORF1725P | |
| 1727 | Mg-dependent DNase | |||
| 1962 | spermidine synthase | |||
| 1963 | M | M.Cco13027III (100% identity) | CAAAAAR | M.Cco2909II |
| 1964 | chitooligosaccharide deacetylase | |||
| 2173 | conjugative transposon mobilization protein | |||
| 2174 | M | M.Tcr6911ORF5080P (80% identity) | M.Cco2909ORF2174P | |
| 2175 | nuclease NucT | |||
| 2181 | SNF2-like protein | |||
| 2182 | M | M.Tcr6911ORF5150P (78% identity) | M.Cco2909ORF2182P | |
| 2183 | Uncharacterised protein | |||
| 2189 | M | M.Cli100320ORF9310P (88% identity) | M.Cco2909ORF2189P | |
| 2190 | DNA topoisomerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1329 | mutator mutT protein | |||
| ??? | R | Cco13027ORF1301P (100% identity) | Cco2909ORF1330P | |
| 1332 | Uncharacterised protein | |||