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Putative Campylobacter upsaliensis NCTC11840 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 1,652,932 bp
GenBank #: UFUV00000000 (NZ_UFUV00000000)
REBASE acronym: Cup11840
Org_num: 42918
All begin NCTC11840_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
324 | glucose inhibited division protein B | |||
??? | R | Cup6824ORF1355P (97% identity) | Cup11840ORF327P | |
327 | M | M.Cup6824ORF1355P (99% identity) | M.Cup11840ORF327P | |
328 | Uncharacterised protein | |||
329 | addiction module toxin, Txe/YoeB family | |||
330 | S | S.Cup6824ORF1355P (75% identity) | S.Cup11840ORF327P | |
331 | tRNA | |||
1087 | UDP-N-acetylmuramate--L-alanine ligase | |||
1088 | R | Cup3940ORF1056P (97% identity) | ATTNNNNNNNTCNNC | Cup11840IP |
1089 | S | S.Cup3940ORF1056P (84% identity) | ATTNNNNNNNTCNNC | S.Cup11840I |
1090 | death-on-curing family protein | |||
1091 | Uncharacterised protein | |||
1092 | M | M.Cup3940ORF1056P (98% identity) | ATTNNNNNNNTCNNC | M.Cup11840I |
1094 | integral membrane protein | |||
1415 | Uncharacterised protein | |||
1416 | M | M.Hwi435ORF2180P (99% identity) | CRTANNNNNNNTTTA | M.Cup11840II |
1417 | S | S1.Cup736ORF30P (61% identity) | CRTANNNNNNNTTTA | S.Cup11840II |
1418 | DGQHR domain | |||
1615 | translocation protein TolB | |||
??? | M | M.Cup6824ORF7620P (99% identity) | M.Cup11840ORF1616P | |
1618 | R | Cup6824ORF7620P (97% identity) | Cup11840ORF1616P | |
1619 | S | S.Cup11541ORF1651P (55% identity) | S1.Cup11840ORF1616P | |
1620 | S | S2.Cup12264ORF75P (87% identity) | S2.Cup11840ORF1616P | |
1621 | periplasmic protein TonB | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
267 | GTP-binding protein Der | |||
268 | M | M.Cup12264ORF1471P (90% identity) | CCGG | M.Cup11840IV |
269 | HNH endonuclease | |||
391 | Thioredoxin | |||
392 | R | Cup197059ORF387P (100% identity) | Cup11840ORF393P | |
393 | M | M.Cup197059ORF387P (100% identity) | M.Cup11840ORF393P | |
394 | Crp/Fnr family transcriptional regulator | |||
627 | succinyl-diaminopimelate desuccinylase | |||
??? | RM | Cup14913ORF596P (98% identity) | Cup11840ORF628P | |
630 | Sulfur carrier protein ThiS | |||
774 | membrane protein | |||
??? | M | M.Che51209ORF832P (72% identity) | M.Cup11840ORF775P | |
777 | Uncharacterized conserved protein | |||
792 | Uncharacterised protein | |||
793 | M | M.Cup197059ORF779P (96% identity) | GATC | M.Cup11840VII |
794 | Ppx/GppA family phosphatase | |||
826 | Uncharacterised protein | |||
827 | RM | Cup6824ORF3545P (99% identity) | Cup11840ORF827P | |
828 | S | Csp25113ORF876P (32% identity) | S.Cup11840ORF827P | |
829 | undecaprenyl diphosphate synthase | |||
1052 | Uncharacterised protein | |||
??? | M | M.Cup6824ORF4825P (99% identity) | ACNGT | M.Cup11840VI |
1054 | R | Cup736ORF6595P (97% identity) | ACNGT | Cup11840VIP |
1055 | Chorismate mutase I / Prephenate dehydratase | |||
1156 | phage virion morphogenesis protein | |||
??? | M | M.Cup197059ORF1141P (98% identity) | M.Cup11840ORF1157P | |
1159 | Uncharacterised protein | |||
1162 | phage repressor protein | |||
1163 | R | Cjes32806ORF9030P (93% identity) | Cup11840ORF1164P | |
1164 | M | M.Cup197059ORF1147P (97% identity) | M.Cup11840ORF1164P | |
1165 | Adenine specific DNA methylase Mod | |||
1164 | modification methylase | |||
1165 | M | M1.Cup197059ORF1148P (99% identity) | M.Cup11840ORF1165P | |
1166 | Uncharacterised protein | |||
1165 | Adenine specific DNA methylase Mod | |||
1166 | R | Cup197059ORF1150P (100% identity) | Cup11840ORF1166P | |
1167 | type II restriction-modification enzyme | |||
1166 | Uncharacterised protein | |||
1167 | M | M.Cup197059ORF1150P (99% identity) | CTRYAG | M.Cup11840IX |
1168 | Uncharacterised protein | |||
1167 | type II restriction-modification enzyme | |||
1168 | M | M2.Cup197059ORF1148P (100% identity) | M.Cup11840ORF1168P | |
1169 | GMP synthase | |||
1184 | tungstate transport system ATP-binding protein | |||
1185 | modification methylase StsI | |||
1184 | tungstate transport system ATP-binding protein | |||
1185 | M | M.Cup197059ORF1168P (100% identity) | M.Cup11840ORF1185P | |
1186 | Uncharacterised protein | |||
1314 | 2-amino-4-hydroxy-6- | |||
1315 | R | Cup6824ORF5895P (96% identity) | Cup11840ORF1316P | |
??? | M | M.Cup197059ORF1283P (96% identity) | M.Cup11840ORF1316P | |
1318 | DNA polymerase I | |||
1345 | Uncharacterised protein | |||
1346 | M | M.Cup197059ORF1313P (99% identity) | M.Cup11840ORF1346P | |
1347 | acetyl-CoA synthetase | |||
1674 | D12-class N6-adenine-specific DNA | |||
1675 | M | M.Cup6824ORF7900P (100% identity) | RAATTY | M.Cup11840III |
1676 | Uncharacterised protein | |||
1686 | Glutamate synthase [NADPH] large chain | |||
1687 | M | M.Cup197059ORF1654P (99% identity) | M.Cup11840ORF1687P | |
1688 | Uncharacterised protein | |||
??? | R | Cup6824ORF7960P (74% identity) | Cup11840ORF1687P | |
1690 | Glutamate synthase [NADPH] small chain | |||
1692 | ribosomal pseudouridine synthase | |||
1693 | M | M.Che9613ORF6920P (83% identity) | GCATC | M.Cup11840X |
1694 | Uncharacterised protein | |||
1695 | Modification methylase FokI | |||
1696 | M | M.Cup12264ORF1825P (95% identity) | CGCG | M.Cup11840V |
1697 | Uncharacterised protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
72 | Na+/H+ antiporter family protein | |||
73 | R | HciT36ORF11P (98% identity) | Cup11840ORF74P | |
74 | M | M.HbiAAQJHORF11060P (98% identity) | M.Cup11840ORF74P | |
75 | radical SAM domain protein | |||
520 | Uncharacterised protein | |||
??? | R | Cup736ORF4090P (99% identity) | Cup11840ORF522P | |
522 | M | M.Cup6ORFAP (97% identity) | M.Cup11840ORF522P | |
523 | Lipid-A-disaccharide synthase; CAzY |