Escherichia coli LD39-1 |
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Putative Escherichia coli LD39-1 RM systems
Ref: Li,R. and Wang,Z. unpublished
REBASE ref # 29320
| Sequence length: | GenBank #: | |
| Chromosome: | 4,684,883 bp | CP047658 |
| plasmid pLD39-1-134kb: | 134,831 bp | CP047660 |
| plasmid pLD39-1-MCR1: | 251,000 bp | CP047659 |
REBASE acronym: EcoLD391
Org_num: 38081
All begin GUU82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19865 | DUF262 domain-containing protein | |||
| 19870 | R | Sbo9733IP (100% identity) | EcoLD391ORF19875P | |
| 19875 | M | M.EcoLECORF19115P (100% identity) | M.EcoLD391ORF19875P | |
| 19880 | S | S.EcoLECORF19115P (100% identity) | S.EcoLD391ORF19875P | |
| 19885 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1930 | cell division protein DamX | |||
| 1935 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoLD391DamP |
| 1940 | ribulose-phosphate 3-epimerase | |||
| 2555 | DUF2556 domain-containing protein | |||
| 2560 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLD391ORF2560P |
| 2565 | DNA-binding transcriptional regulator Fis | |||
| 8730 | endonuclease | |||
| 8735 | M | M.Eco376ORF19685P (99% identity) | GATC | M.EcoLD391ORF8735P |
| 8740 | NinE family protein | |||
| 9220 | phosphohydrolase | |||
| 9225 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoLD391DcmP |
| 9230 | V | V.SspS13DcmP (100% identity) | V.EcoLD391DcmP | |
| 9235 | drug/metabolite exporter YedA | |||
| 11190 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoLD391ORF11195P | |
| 11200 | 60 aa hypothetical protein | |||
| 17855 | phage holin, lambda family | |||
| 17860 | M | M.EcoLECORF17265P (100% identity) | M.EcoLD391ORF17860P | |
| 17865 | TrmB family transcriptional regulator | |||
| plasmid pLD39-1-134kb | ||||
| 24500 | 73 aa hypothetical protein | |||
| 24505 | M | M.SflN92ORF24820P (100% identity) | M.EcoLD391ORF24505P | |
| 24510 | 101 aa hypothetical protein | |||
| plasmid pLD39-1-MCR1 | ||||
| 23155 | DUF1173 family protein | |||
| 23160 | M | M.YpsF1ORFCP (100% identity) | M.EcoLD391ORF23160P | |
| 23165 | nuclease | |||
| 23770 | 108 aa hypothetical protein | |||
| 23775 | M | M.YpsF1ORFBP (100% identity) | M.EcoLD391ORF23775P | |
| 23780 | 202 aa hypothetical protein | |||
| 23885 | DNA-binding protein | |||
| 23890 | M | M.YpsF1ORFDP (100% identity) | M.EcoLD391ORF23890P | |
| 23895 | 284 aa hypothetical protein | |||