Sphingobium species CAP-1 |
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Putative Sphingobium species CAP-1 RM systems
Ref: Ma,X. et al. unpublished
REBASE ref # 29999
| Sequence length: | GenBank #: | |
| chromosome MIN1: | 2,998,318 bp | CP046252 |
| chromosome MIN2: | 1,211,130 bp | CP046253 |
| plasmid p1: | 168,214 bp | CP046254 |
| plasmid p2: | 20,834 bp | CP046255 |
REBASE acronym: SspCAP1
Org_num: 38743
All begin GL174_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome MIN1 | ||||
| 945 | DUF736 family protein | |||
| 950 | M | M.SspCL51ORF1655P (100% identity) | M.SspCAP1ORF950P | |
| 955 | 79 aa hypothetical protein | |||
| 985 | phosphoadenosine phosphosulfate reductase family | |||
| 990 | M | M.SspWTD1ORF8065P (100% identity) | M.SspCAP1ORF990P | |
| 995 | DUF2840 domain-containing protein | |||
| 1225 | ATP-binding protein | |||
| 1230 | V | V.SspWTD1ORF8315P (92% identity) | V.SspCAP1ORF1225P | |
| 1235 | 411 aa hypothetical protein | |||
| 1230 | DNA mismatch endonuclease Vsr | |||
| 1235 | M | M.SspWTD1ORF8315P (100% identity) | M.SspCAP1ORF1235P | |
| 1240 | MerR family transcriptional regulator | |||
| 2700 | 165 aa hypothetical protein | |||
| 2705 | M | M.Lsp15MVORFBP (58% identity) | M.SspCAP1ORF2705P | |
| 2710 | excinuclease ABC subunit UvrA | |||
| 6515 | 267 aa hypothetical protein | |||
| 6520 | RM | SspAEW4ORF12965AP (68% identity) | SspCAP1ORF6520P | |
| 6525 | tyrosine-type recombinase/integrase | |||
| chromosome MIN2 | ||||
| 16585 | dihydropteroate synthase | |||
| 16590 | M | M.SspYG1ORF1806P (93% identity) | M.SspCAP1ORF16590P | |
| 16595 | metalloregulator ArsR/SmtB family transcription | |||
| plasmid p2 | ||||
| 20570 | helix-turn-helix domain-containing protein | |||
| 20575 | R | SspCAP1ORF20635P (97% identity) | SspCAP1ORF20580P | |
| 20580 | M | M.SspCAP1ORF20635P (100% identity) | M.SspCAP1ORF20580P | |
| 20585 | RepB family plasmid replication initiator | |||
| 20625 | helix-turn-helix domain-containing protein | |||
| 20630 | R | SspCAP1ORF20580P (97% identity) | SspCAP1ORF20635P | |
| 20635 | M | M.SspCAP1ORF20580P (100% identity) | M.SspCAP1ORF20635P | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p1 | ||||
| 19940 | ATP-binding protein | |||
| 19945 | M | M.Sfu27551ORF23890P (55% identity) | M.SspCAP1ORF19945P | |
| 19950 | AAA family ATPase | |||