Escherichia coli SL112 |
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Putative Escherichia coli SL112 RM systems
Ref: Shi,A. et al. Biotechnol. Bioeng. (2019) In press
REBASE ref # 29288
Complete sequence: 4,789,695 bp
GenBank #: CP043486
REBASE acronym: EcoSL112
Org_num: 36809
All begin FQT94_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22750 | 582 aa hypothetical protein | |||
| 22755 | S | S.EcohubtORF20055P (98% identity) | AACNNNNNNGTGC | S.EcoSL112ORF22760P |
| 22760 | M | M.EcohubtORF20055P (100% identity) | AACNNNNNNGTGC | M.EcoSL112ORF22760P |
| 22765 | R | EcohubtORF20055P (100% identity) | AACNNNNNNGTGC | EcoSL112ORF22760P |
| 22770 | WYL domain-containing protein | |||
| 22870 | 428 aa hypothetical protein | |||
| 22875 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.EcoSL112ORF22880P |
| 22880 | M | M.EcoLY180ORF22570P (100% identity) | TGANNNNNNTCCA | M.EcoSL112ORF22880P |
| 22885 | 128 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10460 | drug/metabolite exporter YedA | |||
| 10465 | V | V.SsoSE61DcmP (100% identity) | V.EcoSL112DcmP | |
| 10470 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoSL112DcmP |
| 10475 | phosphohydrolase | |||
| 17070 | DNA-binding transcriptional regulator Fis | |||
| 17075 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoSL112ORF17075P |
| 17080 | DUF2556 domain-containing protein | |||
| 17625 | ribulose-phosphate 3-epimerase | |||
| 17630 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSL112DamP |
| 17635 | cell division protein DamX | |||
| 20700 | 68 aa hypothetical protein | |||
| 20705 | M | M.EcosE2ORF21575P (100% identity) | M.EcoSL112ORF20705P | |
| 20710 | 345 aa hypothetical protein | |||
| 22730 | DUF4102 domain-containing protein | |||
| 22735 | R | EcohubtORF20080P (100% identity) | GAAC | EcoSL112ORF22735P |
| 22740 | 5-nucleotidase | |||
| 22895 | AAA domain-containing protein | |||
| 22900 | R | EcohubtORF19915P (100% identity) | EcoSL112ORF22900P | |
| 22905 | HNH endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22885 | 128 aa hypothetical protein | |||
| 22890 | R | EcohubtMcrCP (100% identity) | EcoSL112McrCP | |
| 22895 | R | SflN101McrBP (100% identity) | EcoSL112McrBP | |
| 22900 | HNH endonuclease | |||