Escherichia coli RM9088 |
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Putative Escherichia coli RM9088 RM systems
Ref: Carter,M.Q. et al. unpublished
REBASE ref # 29334
| Sequence length: | GenBank #: | |
| Chromosome: | 5,270,611 bp | CP042298 |
| plasmid p1RM9088: | 167,256 bp | CP042296 |
| plasmid p2RM9088: | 86,529 bp | CP042297 |
REBASE acronym: EcoRM9088
Org_num: 36805
All begin FRV13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3280 | 61 aa hypothetical protein | |||
| 3285 | S | S.EcoW1316ORF21120P (61% identity) | S.EcoRM9088ORF3290P | |
| 3290 | M | M.EcoR24ORF23045P (99% identity) | M.EcoRM9088ORF3290P | |
| 3295 | R | EcoR24ORF23045P (100% identity) | EcoRM9088ORF3290P | |
| 3300 | 267 aa hypothetical protein | |||
| 13940 | 322 aa hypothetical protein | |||
| 13945 | R | Sbo9733IP (100% identity) | EcoRM9088ORF13950P | |
| 13950 | M | M.EcoEC507ORF5530P (99% identity) | M.EcoRM9088ORF13950P | |
| 13955 | S | S.EcoEC507ORF5530P (57% identity) | S.EcoRM9088ORF13950P | |
| 13960 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5970 | L,D-transpeptidase | |||
| 5975 | R | Esp911AORF970P (100% identity) | GGTNACC | EcoRM9088ORF5980P |
| 5980 | M | M.Esp911AORF970P (100% identity) | GGTNACC | M.EcoRM9088ORF5980P |
| 5985 | recombinase family protein | |||
| 11980 | 546 aa hypothetical protein | |||
| 11985 | M | M.EspP079ORF2039P (100% identity) | M.EcoRM9088ORF11985P | |
| 11990 | 62 aa hypothetical protein | |||
| 13305 | drug/metabolite exporter YedA | |||
| 13310 | V | V.SsoSE61DcmP (100% identity) | V.EcoRM9088DcmP | |
| 13315 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoRM9088DcmP |
| 13320 | phosphohydrolase | |||
| 13590 | tellurite resistance protein | |||
| 13610 | M | M.Eco08ORF26065P (100% identity) | M.EcoRM9088ORF13610P | |
| 13615 | TrmB family transcriptional regulator | |||
| 15870 | Eae protein | |||
| 15875 | M | M.EcoR44ORF23150P (99% identity) | M.EcoRM9088ORF15875P | |
| 15880 | ead/Ea22-like family protein | |||
| 19570 | cell division protein DamX | |||
| 19575 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoRM9088DamP |
| 19580 | ribulose-phosphate 3-epimerase | |||
| 20215 | DUF2556 domain-containing protein | |||
| 20220 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoRM9088ORF20220P |
| 20225 | DNA-binding transcriptional regulator Fis | |||
| 25335 | endonuclease | |||
| 25340 | M | M.Ecoph2011ORFAP (100% identity) | GATC | M.EcoRM9088ORF25340P |
| 25345 | NinE family protein | |||
| 27685 | 81 aa hypothetical protein | |||
| 27690 | M | M.EcoG089ORF12810P (100% identity) | M.EcoRM9088ORF27690P | |
| 27695 | 60 aa hypothetical protein | |||
| plasmid p1RM9088 | ||||
| 870 | ATP-binding protein | |||
| 875 | M | M.EcoG089ORF1250P (66% identity) | M.EcoRM9088ORF875P | |
| 880 | 0 aa hypothetical protein | |||
| plasmid p2RM9088 | ||||
| 1005 | 72 aa hypothetical protein | |||
| 1010 | M | M.Eco16309ORFIP (100% identity) | SAY | M.EcoRM9088ORF1010P |
| 1015 | DUF1281 domain-containing protein | |||