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Putative Helicobacter pylori G-Mx-2006-46 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,632,652 bp
GenBank #: CP032046
REBASE acronym: Hpy646
Org_num: 37794
All begin D2C72_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1455 | RNA degradosome polyphosphate kinase | |||
1465 | S | S.HpyNCI32ORFA1P (100% identity) | S.Hpy646ORF1470P | |
1470 | M | M.HpyNCI32ORFA1P (100% identity) | M.Hpy646ORF1470P | |
1475 | R | HpyNCI32ORFA1P (100% identity) | Hpy646ORF1470P | |
1480 | DUF115 domain-containing protein | |||
3160 | 318 aa hypothetical protein | |||
3165 | S | S.HpyNCI32ORFUP (100% identity) | S.Hpy646ORF3165P | |
3170 | cadmium-translocating P-type ATPase | |||
3480 | hydroxyethylthiazole kinase | |||
3485 | R | HpyNCI32ORFSP (100% identity) | Hpy646ORF3495P | |
3490 | S | S.HpyNCI32ORFSP (100% identity) | S.Hpy646ORF3495P | |
3495 | M | M.HpyNCI32ORFSP (100% identity) | M.Hpy646ORF3495P | |
3500 | 0 aa hypothetical protein | |||
6310 | nickel transporter | |||
6315 | S | S.HpyNCI32ORFJP (100% identity) | CRTANNNNNNNTG | S.Hpy646ORF6315P |
6320 | formyltetrahydrofolate deformylase | |||
6840 | 303 aa hypothetical protein | |||
6845 | S | S.HpyNCI32ORFDP (100% identity) | CRTANNNNNNNTC | S.Hpy646ORF6850P |
6850 | M | M.HpyNCI32ORFDP (100% identity) | CRTANNNNNNNTC | M.Hpy646ORF6850P |
6855 | R | HpyNCI32ORFDP (96% identity) | CRTANNNNNNNTC | Hpy646ORF6850P |
6860 | M48 family peptidase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
165 | elongation factor P | |||
170 | M | M.HpyNCI32ORFD1P (100% identity) | M.Hpy646ORF170P | |
175 | 256 aa hypothetical protein | |||
180 | R | HpyNCI32McrBP (100% identity) | R1.Hpy646ORF170P | |
185 | R | HpyNCI32ORFE1P (100% identity) | R2.Hpy646ORF170P | |
190 | pseudaminic acid synthase | |||
580 | exodeoxyribonuclease VII large subunit | |||
585 | R | HpyNCI32VIP (100% identity) | CCGG | Hpy646ORF590P |
590 | M | M.HpyNCI32VI (100% identity) | CCGG | M.Hpy646ORF590P |
595 | AAA family ATPase | |||
825 | polysaccharide deacetylase | |||
830 | R | HpySP207VIP (100% identity) | CTNAG | Hpy646ORF835P |
835 | M | M.HpySP207VI (100% identity) | CTNAG | M.Hpy646ORF835P |
840 | 123 aa hypothetical protein | |||
1550 | outer membrane beta-barrel protein | |||
1555 | M | M.HpyNCI32VII (100% identity) | ATTAAT | M.Hpy646ORF1555P |
1560 | lipopolysaccharide heptosyltransferase family | |||
1565 | translational GTPase TypA | |||
1570 | M | M.HpyNCI32ORFYP (100% identity) | ACNGT | M.Hpy646ORF1570P |
1575 | R | HpyNCI32ORFYP (100% identity) | ACNGT | Hpy646ORF1570P |
1580 | DNA cytosine methyltransferase | |||
1575 | GIY-YIG nuclease family protein | |||
1580 | M | M.HpyNCI32ORFZP (100% identity) | M.Hpy646ORF1580P | |
1585 | catalase | |||
1680 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
??? | M | M.HpyNCI32ORFWP (100% identity) | GTAC | M.Hpy646ORFBP |
??? | R | HpyNCI32ORFWP (100% identity) | GTAC | Hpy646ORFBP |
1695 | M23 family peptidase | |||
2545 | (Fe-S)-binding protein | |||
2550 | RM | HpyNCI39ORFFP (82% identity) | Hpy646ORF2550P | |
2555 | outer membrane protein | |||
3320 | osmoprotection binding protein | |||
3325 | R | HpySP507IVP (100% identity) | CGWCG | Hpy646ORF3330P |
3330 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy646ORF3330P |
3335 | ABC transporter permease subunit | |||
3780 | flagellar hook protein FlgE | |||
3785 | R | HpyNCI32ORFRP (100% identity) | GTNNAC | Hpy646ORF3790P |
3790 | M | M.HpyCOL119ORF4535P (96% identity) | GTNNAC | M.Hpy646ORF3790P |
3795 | ATP-dependent helicase | |||
4585 | acetyl-CoA carboxylase biotin carboxylase | |||
4590 | M | M.HpyNCI32V (100% identity) | TCNNGA | M.Hpy646ORF4590P |
4595 | R | HpyNCI32VP (100% identity) | TCNNGA | Hpy646ORF4590P |
4600 | Laminin subunit alpha-2 precursor | |||
4790 | 0 aa hypothetical protein | |||
4795 | M | M.HpyNCI32ORFPP (100% identity) | GCGC | M.Hpy646ORF4795P |
4800 | flagellar biosynthesis anti-sigma factor FlgM | |||
5250 | HAD family hydrolase | |||
5255 | M | M.HpyNCI32I (100% identity) | CATG | M.Hpy646ORF5255P |
5260 | R | HpyNCI32IP (100% identity) | CATG | Hpy646ORF5255P |
5265 | serine O-acetyltransferase | |||
5995 | S41 family peptidase | |||
??? | RM | HpyNCI32ORFNP (91% identity) | Hpy646ORF6000P | |
6010 | carboxylating nicotinate-nucleotide | |||
6060 | DNA-binding response regulator | |||
6065 | R | HpyNCI32IIP (96% identity) | Hpy646ORF6070P | |
??? | M | M.HpyNCI32II (100% identity) | GAAGA | M1.Hpy646ORF6070P |
6075 | M | M.HpyNCI32II (45% identity) | GAAGA | M2.Hpy646ORF6070P |
6080 | response regulator | |||
6510 | 713 aa hypothetical protein | |||
6515 | RM | HpyNCI32ORFHP (100% identity) | Hpy646ORF6515P | |
6520 | 176 aa hypothetical protein | |||
6600 | outer membrane protein | |||
6605 | R | HpyNCI32ORFFP (100% identity) | CCATC | Hpy646ORF6610P |
6610 | M | M1.HpyU424III (99% identity) | CCATC | M1.Hpy646ORF6610P |
6615 | M | M2.HpyNCI32ORFFP (100% identity) | CCATC | M2.Hpy646ORF6610P |
6620 | YjgP/YjgQ family permease | |||
6745 | ComF family protein | |||
6750 | RM | HpyME04ORF7220P (97% identity) | Hpy646ORF6750P | |
6755 | S | S.HpyNCI32ORFEP (100% identity) | S.Hpy646ORF6750P | |
6760 | DNA polymerase I | |||
6935 | 68 aa hypothetical protein | |||
??? | M | M.HpyNCI32IV (100% identity) | TGCA | M.Hpy646ORFAP |
6945 | R | HpyNCI32IVP (100% identity) | TGCA | Hpy646ORFAP |
6950 | cytochrome c1 | |||
7490 | agmatine deiminase | |||
7495 | M | M1.HpyNCI32ORFBP (100% identity) | CCTC | M1.Hpy646ORF7495P |
7500 | M | M2.HpyNCI32ORFBP (100% identity) | M2.Hpy646ORF7495P | |
7505 | sodium/proline symporter PutP | |||
7680 | [acyl-carrier-protein] S-malonyltransferase | |||
7690 | R | HpyNCI32IIIP (100% identity) | GATC | Hpy646ORF7695P |
7695 | M | M.HpyNCI32III (100% identity) | GATC | M.Hpy646ORF7695P |
7700 | alpha-1,2-fucosyltransferase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6080 | response regulator | |||
6085 | M | M.HpyNCI32ORFMP (100% identity) | M.Hpy646ORF6085P | |
6090 | R | HpyNCI32ORFMP (100% identity) | Hpy646ORF6085P | |
6095 | rod shape-determining protein MreC | |||
6145 | DNA/RNA non-specific endonuclease | |||
6150 | M | M.HpyNCI32ORFKP (94% identity) | M.Hpy646ORF6150P | |
6155 | R | HpyNCI32ORFKP (97% identity) | Hpy646ORF6150P | |
6160 | biotin synthase | |||
6495 | ATP-dependent DNA helicase RecG | |||
6500 | M | M.HpyNCI32ORFGP (100% identity) | M.Hpy646ORF6500P | |
6505 | R | HpyNCI32ORFGP (100% identity) | Hpy646ORF6500P | |
6510 | 713 aa hypothetical protein |