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Putative Helicobacter pylori C-Mx-2008-31 RM systems
Ref: Torres,R.C. et al. unpublished
REBASE ref # 29728
Complete sequence: 1,634,738 bp
GenBank #: CP032031
REBASE acronym: Hpy200831
Org_num: 37778
All begin D2C84_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1810 | RNA degradosome polyphosphate kinase | |||
1820 | S | S.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | S.Hpy200831ORF1825P |
1825 | M | M.HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | M.Hpy200831ORF1825P |
1830 | R | HpyNCI56ORFFP (100% identity) | CCANNNNNNTTT | Hpy200831ORF1825P |
1835 | DUF115 domain-containing protein | |||
3625 | outer membrane beta-barrel protein HofF | |||
3630 | S | S.HpyNCI56ORFMP (100% identity) | S.Hpy200831ORF3630P | |
3635 | cadmium-translocating P-type ATPase | |||
3930 | hydroxyethylthiazole kinase | |||
3935 | R | HpyNCI56ORFPP (100% identity) | Hpy200831ORFAP | |
3940 | S | S.HpyNCI56ORFPP (100% identity) | S.Hpy200831ORFAP | |
??? | M | M.HpyNCI38ORFF1P (100% identity) | M.Hpy200831ORFAP | |
3950 | PAP2 family protein | |||
6705 | nickel transporter | |||
6710 | S | S.HpyNCI56ORFZP (100% identity) | S.Hpy200831ORF6710P | |
6715 | formyltetrahydrofolate deformylase | |||
7240 | 303 aa hypothetical protein | |||
7245 | S | S.HpyNCI56ORFF1P (100% identity) | S.Hpy200831ORF7250P | |
7250 | M | M.HpyNCI56ORFF1P (100% identity) | M.Hpy200831ORF7250P | |
7255 | R | HpyNCI56ORFF1P (100% identity) | Hpy200831ORF7250P | |
7260 | M48 family peptidase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | [acyl-carrier-protein] S-malonyltransferase | |||
65 | R | HpyNCI56XIIP (100% identity) | GATC | Hpy200831ORF70P |
70 | M | M.HpyNCI56XII (100% identity) | GATC | M.Hpy200831ORF70P |
75 | alpha-1,2-fucosyltransferase | |||
490 | elongation factor P | |||
495 | M | M.HpyNCI56ORFCP (100% identity) | M.Hpy200831ORF495P | |
500 | 256 aa hypothetical protein | |||
505 | R | R1.HpyNCI56ORFCP (100% identity) | R1.Hpy200831ORF495P | |
510 | R | R2.HpyNCI56ORFCP (100% identity) | R2.Hpy200831ORF495P | |
515 | pseudaminic acid synthase | |||
910 | exodeoxyribonuclease VII large subunit | |||
915 | M | M.Hpy1152ORF6750P (100% identity) | TCGA | M.Hpy200831ORF915P |
920 | 69 aa hypothetical protein | |||
920 | 69 aa hypothetical protein | |||
925 | R | Hpy1152ORF6735P (100% identity) | CCGG | Hpy200831ORF930P |
930 | M | M.HpyU416IV (100% identity) | CCGG | M.Hpy200831ORF930P |
935 | AAA family ATPase | |||
1905 | outer membrane beta-barrel protein | |||
1910 | M | M.HpyNCI56XI (100% identity) | ATTAAT | M.Hpy200831ORF1910P |
1915 | lipopolysaccharide heptosyltransferase family | |||
1920 | translational GTPase TypA | |||
1925 | M | M.HpyNCI56ORFGP (100% identity) | ACNGT | M.Hpy200831ORF1925P |
1930 | R | Hpy200831ORF2070P (100% identity) | ACNGT | Hpy200831ORF1925P |
1935 | DNA (cytosine-5-)-methyltransferase | |||
2065 | integrase | |||
2070 | M | M.HpyNCI56ORFGP (57% identity) | M.Hpy200831ORF2070P | |
2075 | R | Hpy200831ORF1925P (100% identity) | Hpy200831ORF2070P | |
2080 | DNA cytosine methyltransferase | |||
2075 | GIY-YIG nuclease family protein | |||
2080 | M | M.HpyME03ORF2635P (100% identity) | M.Hpy200831ORF2080P | |
2085 | catalase | |||
2175 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
??? | M | M.Hpy1152ORF5485P (100% identity) | GTAC | M.Hpy200831ORF2180P |
??? | R | HpyNCI56VIP (100% identity) | GTAC | Hpy200831ORF2180P |
2190 | M23 family peptidase | |||
3030 | (Fe-S)-binding protein | |||
3035 | RM | HpyNCI56ORFLP (100% identity) | Hpy200831ORF3035P | |
3040 | outer membrane protein | |||
3775 | osmoprotection binding protein | |||
3780 | R | HpySP507IVP (100% identity) | CGWCG | Hpy200831ORF3785P |
3785 | M | M.Hpyfe21ORF4730P (100% identity) | CGWCG | M.Hpy200831ORF3785P |
3790 | ABC transporter permease subunit | |||
4235 | flagellar hook protein FlgE | |||
4240 | R | HpyNCI56VP (100% identity) | GTNNAC | Hpy200831ORF4245P |
4245 | M | M.Hpy1152ORF3415P (100% identity) | GTNNAC | M.Hpy200831ORF4245P |
4250 | ATP-dependent helicase | |||
4935 | acetyl-CoA carboxylase biotin carboxylase | |||
4940 | M | M.HpyNCI56ORFRP (100% identity) | TCNNGA | M.Hpy200831ORF4940P |
4945 | R | HpyNCI56ORFRP (100% identity) | TCNNGA | Hpy200831ORF4940P |
4950 | Laminin subunit alpha-2 precursor | |||
5150 | 144 aa hypothetical protein | |||
5155 | M | M.Hpy1152ORF2505P (100% identity) | M.Hpy200831ORF5155P | |
5160 | flagellar biosynthesis anti-sigma factor FlgM | |||
5630 | HAD family hydrolase | |||
5635 | M | M.HpyNCI56I (93% identity) | CATG | M.Hpy200831ORF5635P |
5640 | IceA2 protein | |||
6380 | PDZ domain-containing protein | |||
6385 | R | HpyNCI56IVP (100% identity) | GANTC | Hpy200831ORF6390P |
6390 | M | M.HpyNCI56IV (100% identity) | GANTC | M.Hpy200831ORF6390P |
6395 | DNA methyltransferase | |||
6390 | site-specific DNA-methyltransferase | |||
??? | RM | HpyNCI56ORFUP (100% identity) | Hpy200831ORF6395P | |
6405 | carboxylating nicotinate-nucleotide | |||
6455 | DNA-binding response regulator | |||
6460 | R | HpyNCI56ORFXP (100% identity) | GAAGA | Hpy200831ORF6465P |
6465 | M | M2.Hpy1152ORF1195P (100% identity) | GAAGA | M1.Hpy200831ORF6465P |
6470 | M | M1.Hpy1152ORF1195P (100% identity) | GAAGA | M2.Hpy200831ORF6465P |
6475 | response regulator | |||
6895 | DEAD/DEAH box helicase | |||
6900 | RM | HpyNCI56ORFA1P (96% identity) | Hpy200831ORF6900P | |
6905 | CAAX protease | |||
6975 | outer membrane protein | |||
6980 | R | HpyNCI56XP (100% identity) | CCATC | Hpy200831ORF6985P |
??? | M | M2.HpyNCI56X (100% identity) | CCATC | M1.Hpy200831ORF6985P |
??? | M | M1.Hpy1152ORF675P (100% identity) | CCATC | M2.Hpy200831ORF6985P |
6995 | YjgP/YjgQ family permease | |||
7120 | ComF family protein | |||
7125 | RM | HpyNCI56ORFD1P (100% identity) | CYANNNNNGTA | Hpy200831ORF7125P |
7130 | S | S.Hpyfe89ORF275P (97% identity) | S.Hpy200831ORF7125P | |
7135 | DNA polymerase I | |||
7185 | addiction module antidote protein | |||
7190 | M | M2.HpyNCI56ORFE1P (100% identity) | M.Hpy200831ORF7190P | |
7195 | DNA (cytosine-5-)-methyltransferase | |||
7190 | DNA (cytosine-5-)-methyltransferase | |||
7195 | M | M1.HpyNCI56ORFE1P (100% identity) | M.Hpy200831ORF7195P | |
7200 | R | HpyNCI56ORFE1P (100% identity) | Hpy200831ORF7195P | |
7205 | cytochrome-c peroxidase | |||
7325 | 68 aa hypothetical protein | |||
??? | M | M.HpyNCI56II (100% identity) | TGCA | M.Hpy200831ORFBP |
7335 | R | HpyNCI56IIP (100% identity) | TGCA | Hpy200831ORFBP |
7340 | cytochrome c1 | |||
7430 | 366 aa hypothetical protein | |||
7435 | M | M.HpySP104ORF7575P (100% identity) | M.Hpy200831ORF7435P | |
7440 | DUF1887 domain-containing protein | |||
7875 | agmatine deiminase | |||
7880 | M | M1.HpyNCI56VII (100% identity) | CCTC | M1.Hpy200831ORF7880P |
7885 | M | M2.HpyNCI56VIIP (100% identity) | CCTC | M2.Hpy200831ORF7880P |
7890 | R | Hpy1152ORF7815P (100% identity) | CCTC | Hpy200831ORF7880P |
7895 | sodium/proline symporter PutP | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6475 | response regulator | |||
6480 | M | M.HpyNCI56ORFWP (99% identity) | M.Hpy200831ORF6480P | |
6485 | R | HpyNCI56ORFWP (100% identity) | Hpy200831ORF6480P | |
6490 | rod shape-determining protein MreC | |||
6540 | DNA/RNA non-specific endonuclease | |||
6545 | M | M.HpyNCI56ORFYP (100% identity) | M.Hpy200831ORF6545P | |
6550 | R | Hpy1152ORF1120P (100% identity) | Hpy200831ORF6545P | |
6555 | biotin synthase | |||
6885 | ATP-dependent DNA helicase RecG | |||
6890 | M | M.HpyNCI56ORFB1P (100% identity) | M.Hpy200831ORF6890P | |
6895 | R | HpyNCI56ORFB1P (100% identity) | Hpy200831ORF6890P | |
6900 | class I SAM-dependent DNA methyltransferase |