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Putative Helicobacter pylori B128 RM systems
Ref: Su,H. et al. Sci Rep 9 (1), 11203 (2019)
REBASE ref # 29574
Complete sequence: 1,675,360 bp
GenBank #: CP024951
REBASE acronym: HpyB128K
Org_num: 37464
All begin CV725_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
490 | formyltetrahydrofolate deformylase | |||
495 | S | S.HpyR3cORF510P (100% identity) | S.HpyB128KORF495P | |
500 | nickel transporter | |||
4425 | RNA degradosome polyphosphate kinase | |||
??? | S | S.Hpy713KORF5375P (100% identity) | S.HpyB128KORF4440P | |
4440 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB128KORF4440P | |
4445 | R | HpyR3cORF5365P (100% identity) | HpyB128KORF4440P | |
4450 | DUF115 domain-containing protein | |||
4730 | type I restriction endonuclease | |||
4735 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB128KORF4735P | |
4740 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB128KORF4735P | |
4745 | R | HpyR3cORF5080P (100% identity) | HpyB128KORF4735P | |
4750 | hydroxyethylthiazole kinase | |||
5025 | cadmium-translocating P-type ATPase | |||
5030 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB128KORF5030P | |
5035 | outer membrane beta-barrel protein HofF | |||
8180 | M48 family peptidase | |||
8185 | R | HpyR3cORF8160P (100% identity) | HpyB128KORF8190P | |
8190 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB128KORF8190P | |
??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB128KORF8190P | |
8205 | 0 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
45 | DEAD/DEAH box helicase | |||
50 | RM | HpyR3cORF55P (100% identity) | HpyB128KORF50P | |
55 | DUF4065 domain-containing protein | |||
130 | outer membrane protein | |||
135 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB128KORF140P |
??? | M | M1.HpyR3cORF145P (93% identity) | CCATC | M1.HpyB128KORF140P |
??? | M | M2.HpyR3cORF145P (77% identity) | CCATC | M2.HpyB128KORF140P |
150 | YjgP/YjgQ family permease | |||
275 | ComF family protein | |||
280 | RM | HpyR3cORF285P (100% identity) | HpyB128KORF280P | |
285 | S | S.HpyR3cORF285P (51% identity) | S1.HpyB128KORF280P | |
290 | S | S2.HpyB1283ORF280P (100% identity) | S2.HpyB128KORF280P | |
295 | DNA polymerase I | |||
565 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
??? | R | Hpy128713ORF570P (100% identity) | HpyB128KORF570P | |
580 | type II restriction endonuclease | |||
575 | 138 aa hypothetical protein | |||
580 | R | HpyB8ORF127P (40% identity) | HpyB128KORF580P | |
585 | S41 family peptidase | |||
1305 | serine acetyltransferase | |||
??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB128KORF1320P |
1320 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB128KORF1320P |
1325 | HAD family hydrolase | |||
1500 | purine-nucleoside phosphorylase | |||
1505 | R | HpyU408XP (100% identity) | TCNGA | HpyB128KORF1510P |
1510 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB128KORF1510P |
1515 | 640 aa hypothetical protein | |||
1800 | flagellar biosynthesis protein FlgM | |||
1805 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB128KORF1805P |
1810 | 144 aa hypothetical protein | |||
1995 | Laminin subunit alpha-2 precursor | |||
2000 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB128KORF2005P |
2005 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB128KORF2005P |
2010 | acetyl-CoA carboxylase biotin carboxylase | |||
2455 | nicotinate-nucleotide diphosphorylase | |||
??? | RM | Hpy166ORF5280P (94% identity) | HpyB128KORF2460P | |
2470 | agmatine deiminase | |||
2465 | DNA methyltransferase | |||
??? | M | M.HpyB1281ORFAP (100% identity) | M.HpyB128KORFAP | |
2475 | site-specific DNA-methyltransferase | |||
2470 | agmatine deiminase | |||
2475 | M | M1.HpyR3cORF7300P (100% identity) | CCTC | M1.HpyB128KORF2475P |
2480 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyB128KORF2475P |
??? | R | Hpy713KORF7330P (100% identity) | CCTC | HpyB128KORF2475P |
2490 | restriction endonuclease | |||
2485 | restriction endonuclease | |||
2490 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB128KORF2490P |
2495 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB128KORF2490P |
2500 | DNA cytosine methyltransferase | |||
2705 | 356 aa hypothetical protein | |||
2710 | M | M.HpyR3cORF7075P (90% identity) | GATC | M.HpyB128KORF2710P |
2715 | alpha-1,2-fucosyltransferase | |||
3560 | exodeoxyribonuclease VII large subunit | |||
3565 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB128KORF3565P |
3570 | 198 aa hypothetical protein | |||
3570 | 198 aa hypothetical protein | |||
3575 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB128KORF3580P |
3580 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB128KORF3580P |
3585 | ATP-dependent chaperone ClpB | |||
4515 | outer membrane beta-barrel protein | |||
4520 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyB128KORF4520P |
4525 | lipopolysaccharide heptosyltransferase family | |||
4530 | translational GTPase TypA | |||
??? | M | M.HpyR3cORF5270P (99% identity) | ACNGT | M.HpyB128KORF4535P |
4545 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB128KORF4535P |
4550 | DNA (cytosine-5-)-methyltransferase | |||
4545 | restriction endonuclease | |||
4550 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB128KORF4550P |
??? | R | Hpy713KORF5270P (100% identity) | ACGT | HpyB128KORF4550P |
4560 | 82 aa hypothetical protein | |||
4715 | phosphatase PAP2 family protein | |||
4720 | R | HpyR3cORF5085P (100% identity) | HpyB128KORF4725P | |
4725 | M | M.HpyR3cORF5085P (100% identity) | M.HpyB128KORF4725P | |
4730 | type I restriction endonuclease | |||
5625 | 0 aa hypothetical protein | |||
5630 | RM | HpyR3cORF4175P (100% identity) | HpyB128KORF5630P | |
5635 | (Fe-S)-binding protein | |||
6490 | M23 family peptidase | |||
6495 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB128KORF6500P |
??? | M | M.Hpy713KORF3315P (100% identity) | GTAC | M.HpyB128KORF6500P |
6505 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
6720 | flagellar hook protein FlgE | |||
6725 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB128KORF6730P |
6730 | M | M.HpyB1283ORF3080P (100% identity) | GTNNAC | M.HpyB128KORF6730P |
6735 | ATP-dependent helicase | |||
7555 | glycosyltransferase family 8 protein | |||
7560 | M | M.HpyR3cORF7520P (100% identity) | M.HpyB128KORF7560P | |
7565 | site-specific DNA-methyltransferase | |||
8095 | elongation factor Ts | |||
??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB128KORF8105P |
8105 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB128KORF8105P |
8110 | 68 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
40 | M | M.HpyB128ORF79P (100% identity) | M.HpyB128KORF40P | |
45 | R | HpyR3cORF45P (100% identity) | HpyB128KORF40P | |
50 | class I SAM-dependent DNA methyltransferase | |||
2325 | biotin synthase | |||
2330 | R | HpyR3cORF7440P (100% identity) | HpyB128KORF2335P | |
2335 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB128KORF2335P | |
2340 | DNA/RNA non-specific endonuclease | |||
2390 | rod shape-determining protein MreC | |||
2395 | R | HpyR3cORF7375P (100% identity) | HpyB128KORF2400P | |
2400 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB128KORF2400P | |
2405 | DNA-binding response regulator |